LOC117599490


Basic Information

Item Value
gene id LOC117599490
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2506587 ~ 2507094 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579903.1
ttacaGTAGAGTCTGGGATTGGAGAAAAGGATgagtattatgatgatgtcgtcgacaccagtgacttcataagtgaTACAGGAAGAGTTGACCCACCAGAGGACTACGATGATGCCGTCACTGCTGGACCGATCCCTGATAACGTGGatgaggatgaagctgagaattatgatgacgccattacagctgatcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579903.1 True 194 ncRNA 0.46 3 2506587 2507094

Neighbor

gene id symbol gene type direction distance location
LOC117599505 NA coding downstream 51506 2454252 ~ 2455081 (-)
LOC117599531 NA coding downstream 77646 2428508 ~ 2428941 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding downstream 91394 2412542 ~ 2415193 (-)
LOC117599527 NA coding downstream 125253 2379889 ~ 2381334 (-)
LOC117599435 NA coding downstream 133283 2371624 ~ 2373304 (-)
LOC117599488 NA coding upstream 36053 2543147 ~ 2543631 (-)
LOC117599438 NA coding upstream 121571 2628665 ~ 2630328 (-)
LOC117599439 LOC108261384,LOC108279477,LOC108261932,LOC108261705,LOC108261610,LOC108261515,LOC108261687,LOC108261554,LOC108262337 coding upstream 157303 2664397 ~ 2667515 (-)
LOC117599440 LOC108261400,LOC108279477,LOC108262466,LOC108261384,LOC108261705,LOC108261423,LOC108261555,LOC108261611,LOC108261687 coding upstream 161261 2668355 ~ 2669336 (-)
LOC117599441 LOC108261611 coding upstream 164927 2672021 ~ 2678032 (-)
LOC117599514 LOC108261932,LOC108261384,LOC108279477 non-coding downstream 46475 2459061 ~ 2460112 (-)
LOC117599518 NA non-coding downstream 47746 2457641 ~ 2458841 (-)
G275520 LOC108261384,LOC108262118,LOC108279477,LOC108261705,LOC108261400,LOC108261611,LOC108261423,LOC108444125,LOC108415949 non-coding downstream 69520 2436635 ~ 2437067 (-)
LOC117599475 LOC108279477 non-coding downstream 96483 2377505 ~ 2410104 (-)
G275523 LOC108261400,LOC108261705,LOC108261423,LOC108261611,LOC108262466,LOC108261555,LOC108261384,LOC108279477 non-coding upstream 7650 2514744 ~ 2549652 (-)
G275524 LOC108261611,LOC108261423 non-coding upstream 28350 2535444 ~ 2569264 (-)
G275536 LOC108261384,LOC108261611,LOC108262118,LOC108279477 non-coding upstream 125332 2632426 ~ 2709379 (-)
G275815 NA non-coding upstream 327606 2834700 ~ 2845904 (-)
G275891 NA non-coding upstream 472743 2979837 ~ 2981862 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other downstream 394639 2089064 ~ 2111948 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other downstream 437458 2065674 ~ 2069129 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 444467 2061487 ~ 2062120 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 466525 2038235 ~ 2040062 (-)
LOC117599486 LOC108279477 other downstream 879324 1587770 ~ 1627263 (-)
G275981 NA other upstream 635440 3142534 ~ 3201297 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other upstream 719501 3226595 ~ 3335017 (-)
rps16 rps16 other upstream 792163 3299257 ~ 3384923 (-)
lin7a lin7a other upstream 923096 3430190 ~ 3494016 (-)
G276075 NA other upstream 1029903 3536997 ~ 3538743 (-)

Expression


Co-expression Network