LOC117599492


Basic Information

Item Value
gene id LOC117599492
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 530099 ~ 530740 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579905.1
catgacatctcacaatcaaccttatcttactttaagcttctgaaatccctcttatcaaatttatcaaagCTTCTTTGGATGAGGATTTTAttgagtataaatgtgtttaaaaaacccaaaacaaacaaattgttctttttccagtaaagtctgggattggagaaaaggctgagtattatgatgatgtcatcgacaccagtgacttcataagtgaTACAGGAAGAGTTGACCCACCAGAGGACTACGATGATGCCGTCACTGCTGGACCGATCCCTGATAACGTGGatgaggatgaagcagagaattatgatgacgccattacagctga

Function

GO:

id name namespace
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579905.1 True 328 lncRNA 0.39 3 530099 530740

Neighbor

gene id symbol gene type direction distance location
LOC117599468 LOC108262260 coding downstream 54884 422513 ~ 475215 (-)
LOC117599422 LOC108279481,LOC108262260,LOC108279495 coding downstream 135846 376457 ~ 394253 (-)
cmah LOC108279485 coding downstream 365358 131691 ~ 164741 (-)
zdhhc17 zdhhc17,LOC102798393 coding downstream 422262 89473 ~ 107837 (-)
osbpl8 osbpl8,LOC107555879 coding downstream 480062 14021 ~ 50037 (-)
LOC117595727 LOC108262260 coding upstream 132985 663725 ~ 683075 (-)
LOC113543469 LOC108279491,LOC108262260 coding upstream 155296 686036 ~ 694483 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding upstream 374507 905247 ~ 906730 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding upstream 376490 907230 ~ 907847 (-)
LOC117599470 LOC107667668 coding upstream 644570 1175310 ~ 1177234 (-)
G275126 NA non-coding downstream 41177 487792 ~ 488922 (-)
G275141 NA non-coding downstream 81792 440793 ~ 448307 (-)
G275049 NA non-coding downstream 182650 347214 ~ 347449 (-)
G275024 NA non-coding downstream 237503 291650 ~ 292596 (-)
G275029 NA non-coding downstream 244868 250671 ~ 285231 (-)
LOC117599521 NA non-coding upstream 2086 532826 ~ 533618 (-)
G275167 cpsf6,LOC108279496,LOC107729149,LOC107555887,LOC106576649,LOC106593552 non-coding upstream 172591 703331 ~ 704306 (-)
G275168 NA non-coding upstream 173030 703770 ~ 705100 (-)
G275169 NA non-coding upstream 177591 708331 ~ 718266 (-)
G275170 NA non-coding upstream 187705 718445 ~ 719883 (-)
LOC113532194 far1,LOC108279482,LOC107590516,LOC103366393 other downstream 5074 514984 ~ 525025 (-)
LOC113531599 LOC108262260,LOC108279491,LOC108279481 other downstream 161062 354974 ~ 369037 (-)
LOC113535352 LOC107729140 other downstream 243047 281434 ~ 287052 (-)
LOC117599453 yeats4,LOC107555875,LOC107590554 other downstream 276254 248336 ~ 253845 (-)
G274979 NA other downstream 384059 144583 ~ 146040 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other upstream 5706 536446 ~ 539298 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other upstream 29967 560707 ~ 629004 (-)
LOC117599529 NA other upstream 52458 583198 ~ 586818 (-)
LOC117599533 NA other upstream 66674 597414 ~ 601029 (-)
LOC117599510 NA other upstream 98324 629064 ~ 631387 (-)

Expression


Co-expression Network