LOC117599493


Basic Information

Item Value
gene id LOC117599493
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 840628 ~ 841268 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579906.1
catgacatctcacaatcaaccttatcttactttaagcttctgaaatccctcttatcaaatttatcaaagCTTCTTTGGATGAGGATTTTAttgagtataaatgtgtttaaaaaacccaaaacaaacaaattgttctttttccagtaaagtctgggattggagaaaaggctgagtattatgatgatgtcatcgacaccagtgacttcataagtgaTACAGGAAGAGTTGACCCACCAGAGGACTACGATGATGCCGTCACTGCTGGACCGATCCCTGATAACGTGGatgaggatgaagcagagaattatgatgacgccattacagctga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579906.1 True 328 lncRNA 0.39 3 840628 841268

Neighbor

gene id symbol gene type direction distance location
LOC113543469 LOC108279491,LOC108262260 coding downstream 146145 686036 ~ 694483 (-)
LOC117595727 LOC108262260 coding downstream 157553 663725 ~ 683075 (-)
LOC117599469 LOC108262260 coding downstream 270617 481574 ~ 570011 (-)
LOC117599468 LOC108262260 coding downstream 365413 422513 ~ 475215 (-)
LOC117599422 LOC108279481,LOC108262260,LOC108279495 coding downstream 446375 376457 ~ 394253 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding upstream 63979 905247 ~ 906730 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding upstream 65962 907230 ~ 907847 (-)
LOC117599470 LOC107667668 coding upstream 334042 1175310 ~ 1177234 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding upstream 400870 1242138 ~ 1255186 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding upstream 524843 1366111 ~ 1376319 (-)
G275203 NA non-coding downstream 55775 758942 ~ 784853 (-)
G275202 NA non-coding downstream 58418 756400 ~ 782210 (-)
G275178 NA non-coding downstream 89633 746450 ~ 750995 (-)
G275170 NA non-coding downstream 120745 718445 ~ 719883 (-)
G275169 NA non-coding downstream 122362 708331 ~ 718266 (-)
LOC117599512 LOC108261384,LOC108279477,LOC108261687,LOC108261932 non-coding upstream 4665 845933 ~ 846981 (-)
LOC117599484 NA non-coding upstream 28722 869990 ~ 870475 (-)
LOC117599491 NA non-coding upstream 35770 877038 ~ 878254 (-)
LOC117599477 LOC108279477 non-coding upstream 59505 900773 ~ 901840 (-)
G275382 LOC108261611,LOC108261401,LOC108444127,LOC108444122 non-coding upstream 255877 1097145 ~ 1313535 (-)
LOC117599510 NA other downstream 209241 629064 ~ 631387 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other downstream 211624 560707 ~ 629004 (-)
LOC117599533 NA other downstream 239599 597414 ~ 601029 (-)
LOC117599529 NA other downstream 253810 583198 ~ 586818 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other downstream 301330 536446 ~ 539298 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 422481 1263749 ~ 1297899 (-)
LOC117599495 NA other upstream 441186 1282454 ~ 1282934 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 574637 1415905 ~ 1441145 (-)
G275420 NA other upstream 624591 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 746502 1587770 ~ 1627263 (-)

Expression


Co-expression Network