LOC117599495


Basic Information

Item Value
gene id LOC117599495
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1282454 ~ 1282934 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579908.1
agaaaaggctgagtattatgatgatgtcatcgacaccagtgacttcataagtgaTACAGGAAGAGTTGACCCACCAGAGGACTACGATGATGCCGTCACTGCTGGACCGATCCCTGATAACGTGGatgaggatgaagcagagaattatgatgacgccattacagctga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579908.1 True 168 ncRNA 0.46 3 1282454 1282934

Neighbor

gene id symbol gene type direction distance location
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 27268 1242138 ~ 1255186 (-)
LOC117599470 LOC107667668 coding downstream 105220 1175310 ~ 1177234 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding downstream 374607 907230 ~ 907847 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding downstream 375724 905247 ~ 906730 (-)
LOC113543469 LOC108279491,LOC108262260 coding downstream 587971 686036 ~ 694483 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding upstream 83177 1366111 ~ 1376319 (-)
LOC117599496 NA coding upstream 105262 1388196 ~ 1388678 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding upstream 108966 1391900 ~ 1395944 (-)
LOC117599489 NA coding upstream 128197 1411131 ~ 1411615 (-)
LOC117599435 NA coding upstream 1088690 2371624 ~ 2373304 (-)
LOC117599476 LOC108279477 non-coding downstream 19744 1261642 ~ 1262710 (-)
LOC117599532 NA non-coding downstream 40550 1241367 ~ 1241904 (-)
G275393 NA non-coding downstream 133690 1145605 ~ 1148764 (-)
LOC117599494 NA non-coding downstream 149885 1132088 ~ 1132569 (-)
LOC117599477 LOC108279477 non-coding downstream 380614 900773 ~ 901840 (-)
LOC117599498 NA non-coding upstream 9231 1292165 ~ 1293976 (-)
G275408 NA non-coding upstream 103618 1386552 ~ 1433883 (-)
G275369 LOC108261400,LOC108279477,LOC108261423,LOC108262466,LOC108261705,LOC108261384,LOC108261555,LOC108261687,LOC108261611 non-coding upstream 113505 1396439 ~ 1462056 (-)
G275412 NA non-coding upstream 130458 1413392 ~ 1454206 (-)
G275416 LOC108279477,LOC108261384,LOC108261705,LOC108261687,LOC108261555,LOC108262265,LOC108261423,LOC108444129,LOC108412318 non-coding upstream 158305 1441239 ~ 1458199 (-)
LOC117599510 NA other downstream 651067 629064 ~ 631387 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other downstream 653450 560707 ~ 629004 (-)
LOC117599533 NA other downstream 681425 597414 ~ 601029 (-)
LOC117599529 NA other downstream 695636 583198 ~ 586818 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other downstream 743156 536446 ~ 539298 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 132971 1415905 ~ 1441145 (-)
G275420 NA other upstream 182925 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 304836 1587770 ~ 1627263 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 755301 2038235 ~ 2040062 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other upstream 778553 2061487 ~ 2062120 (-)

Expression


Co-expression Network