LOC117599499


Basic Information

Item Value
gene id LOC117599499
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1691307 ~ 1692174 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579912.1
ACCCaccacaacaaccaccacaacaCCCACCGCAACCACCAAATCAGTAAGAGCCGCTTCAAATCCTACATCACCTGGAGctccatccacccctccactgGTTCTCGTTGTGTTGGGAACGCTGCTCTTCCTGGCCTTAGTGCTTCTGCTGGTACTGTTTTACCAGAACAGAGTGCTCAGGAGAGttgtctctaagaggaggcgtaagactcagcctgaggcagtctatgaggagatcaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579912.1 True 241 lncRNA 0.53 3 1691307 1692174

Neighbor

gene id symbol gene type direction distance location
LOC117599489 NA coding downstream 279692 1411131 ~ 1411615 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding downstream 295363 1391900 ~ 1395944 (-)
LOC117599496 NA coding downstream 302629 1388196 ~ 1388678 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding downstream 314988 1366111 ~ 1376319 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 436121 1242138 ~ 1255186 (-)
LOC117599435 NA coding upstream 679450 2371624 ~ 2373304 (-)
LOC117599527 NA coding upstream 687715 2379889 ~ 2381334 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding upstream 720368 2412542 ~ 2415193 (-)
LOC117599531 NA coding upstream 736334 2428508 ~ 2428941 (-)
LOC117599505 NA coding upstream 762078 2454252 ~ 2455081 (-)
LOC117599504 NA non-coding downstream 3628 1687208 ~ 1687679 (-)
LOC117599523 LOC108261687,LOC108279477,LOC108261423,LOC108261555,LOC108261705,LOC108261384,LOC108262466 non-coding downstream 58985 1631739 ~ 1632322 (-)
LOC117599524 NA non-coding downstream 61726 1629023 ~ 1629581 (-)
LOC117599525 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 non-coding downstream 97343 1593154 ~ 1593964 (-)
LOC117599485 NA non-coding downstream 101509 1589313 ~ 1589798 (-)
LOC117599500 NA non-coding upstream 22718 1714892 ~ 1715739 (-)
LOC117599478 LOC108279477,LOC108261932 non-coding upstream 134642 1826816 ~ 1832783 (-)
LOC117599520 NA non-coding upstream 141272 1833446 ~ 1833855 (-)
G275457 NA non-coding upstream 169323 1861497 ~ 1906414 (-)
G275465 NA non-coding upstream 232853 1925027 ~ 2079405 (-)
LOC117599486 LOC108279477 other downstream 64044 1587770 ~ 1627263 (-)
G275420 NA other downstream 113791 1465859 ~ 1577516 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other downstream 250162 1415905 ~ 1441145 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 393408 1263749 ~ 1297899 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 346061 2038235 ~ 2040062 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other upstream 369313 2061487 ~ 2062120 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other upstream 373500 2065674 ~ 2069129 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other upstream 396890 2089064 ~ 2111948 (-)
G275981 NA other upstream 1450360 3142534 ~ 3201297 (-)

Expression


Co-expression Network