LOC117599500


Basic Information

Item Value
gene id LOC117599500
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1714892 ~ 1715739 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579913.1
ACCACCAAATCAGTAAGAGCCGCTTCAAATCCTACATCACCTGGAGctccatccacccctccactgGTTCTCGTTGTGTTGGGAACGCTGCTCTTCCTGGCCTTAGTGCTTCTGCTGGTACTGTTTTACCAGAACAGAGTGCTCAGGAGAGttgtctctaagaggaggcgtaagactcagcctgaggcagtctatgaggagatcaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579913.1 True 207 lncRNA 0.52 3 1714892 1715739

Neighbor

gene id symbol gene type direction distance location
LOC117599489 NA coding downstream 303277 1411131 ~ 1411615 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding downstream 318948 1391900 ~ 1395944 (-)
LOC117599496 NA coding downstream 326214 1388196 ~ 1388678 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding downstream 338573 1366111 ~ 1376319 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 459706 1242138 ~ 1255186 (-)
LOC117599435 NA coding upstream 655885 2371624 ~ 2373304 (-)
LOC117599527 NA coding upstream 664150 2379889 ~ 2381334 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding upstream 696803 2412542 ~ 2415193 (-)
LOC117599531 NA coding upstream 712769 2428508 ~ 2428941 (-)
LOC117599505 NA coding upstream 738513 2454252 ~ 2455081 (-)
LOC117599499 NA non-coding downstream 22718 1691307 ~ 1692174 (-)
LOC117599504 NA non-coding downstream 27213 1687208 ~ 1687679 (-)
LOC117599523 LOC108261687,LOC108279477,LOC108261423,LOC108261555,LOC108261705,LOC108261384,LOC108262466 non-coding downstream 82570 1631739 ~ 1632322 (-)
LOC117599524 NA non-coding downstream 85311 1629023 ~ 1629581 (-)
LOC117599525 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 non-coding downstream 120928 1593154 ~ 1593964 (-)
LOC117599478 LOC108279477,LOC108261932 non-coding upstream 111077 1826816 ~ 1832783 (-)
LOC117599520 NA non-coding upstream 117707 1833446 ~ 1833855 (-)
G275457 NA non-coding upstream 145758 1861497 ~ 1906414 (-)
G275465 NA non-coding upstream 209288 1925027 ~ 2079405 (-)
LOC117599506 NA non-coding upstream 210594 1926333 ~ 1927161 (-)
LOC117599486 LOC108279477 other downstream 87629 1587770 ~ 1627263 (-)
G275420 NA other downstream 137376 1465859 ~ 1577516 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other downstream 273747 1415905 ~ 1441145 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 416993 1263749 ~ 1297899 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 322496 2038235 ~ 2040062 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other upstream 345748 2061487 ~ 2062120 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other upstream 349935 2065674 ~ 2069129 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other upstream 373325 2089064 ~ 2111948 (-)
G275981 NA other upstream 1426795 3142534 ~ 3201297 (-)

Expression


Co-expression Network