LOC117599504


Basic Information

Item Value
gene id LOC117599504
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1687208 ~ 1687679 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579917.1
gagtattatgatgatgtgatcgacaccagtgacttcataagtgaTACAGGAAGAGTTGACCCACCAGAGGACTACGATGATGCCGTCACTGCTGGACCGATCCCTGATAACGTGGatgaggatgaagcagagaattatgatgacgccattacagctga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579917.1 True 158 ncRNA 0.47 3 1687208 1687679

Neighbor

gene id symbol gene type direction distance location
LOC117599489 NA coding downstream 275593 1411131 ~ 1411615 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding downstream 291264 1391900 ~ 1395944 (-)
LOC117599496 NA coding downstream 298530 1388196 ~ 1388678 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding downstream 310889 1366111 ~ 1376319 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 432022 1242138 ~ 1255186 (-)
LOC117599435 NA coding upstream 683945 2371624 ~ 2373304 (-)
LOC117599527 NA coding upstream 692210 2379889 ~ 2381334 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding upstream 724863 2412542 ~ 2415193 (-)
LOC117599531 NA coding upstream 740829 2428508 ~ 2428941 (-)
LOC117599505 NA coding upstream 766573 2454252 ~ 2455081 (-)
LOC117599523 LOC108261687,LOC108279477,LOC108261423,LOC108261555,LOC108261705,LOC108261384,LOC108262466 non-coding downstream 54886 1631739 ~ 1632322 (-)
LOC117599524 NA non-coding downstream 57627 1629023 ~ 1629581 (-)
LOC117599525 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 non-coding downstream 93244 1593154 ~ 1593964 (-)
LOC117599485 NA non-coding downstream 97410 1589313 ~ 1589798 (-)
G275419 LOC108261384,LOC108261611,LOC108279477 non-coding downstream 113886 1459923 ~ 1573322 (-)
LOC117599499 NA non-coding upstream 3628 1691307 ~ 1692174 (-)
LOC117599500 NA non-coding upstream 27213 1714892 ~ 1715739 (-)
LOC117599478 LOC108279477,LOC108261932 non-coding upstream 139137 1826816 ~ 1832783 (-)
LOC117599520 NA non-coding upstream 145767 1833446 ~ 1833855 (-)
G275457 NA non-coding upstream 173818 1861497 ~ 1906414 (-)
LOC117599486 LOC108279477 other downstream 59945 1587770 ~ 1627263 (-)
G275420 NA other downstream 109692 1465859 ~ 1577516 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other downstream 246063 1415905 ~ 1441145 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 389309 1263749 ~ 1297899 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 350556 2038235 ~ 2040062 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other upstream 373808 2061487 ~ 2062120 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other upstream 377995 2065674 ~ 2069129 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other upstream 401385 2089064 ~ 2111948 (-)
G275981 NA other upstream 1454855 3142534 ~ 3201297 (-)

Expression


Co-expression Network