LOC117599505


Basic Information

Item Value
gene id LOC117599505
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2454252 ~ 2455081 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579918.1
gtggatgatgagcttctctcaggtgaTACAGGAAGAGTTGACCCACCAGAGGACTACGATGATGCCGTCACTGCTGGACCGATCCCTGATAACGTGGatgaggatgaagctgagaattatgatgacgccattacagctgatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579918.1 True 142 ncRNA 0.50 3 2454252 2455081

Neighbor

gene id symbol gene type direction distance location
LOC117599531 NA coding downstream 25311 2428508 ~ 2428941 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding downstream 39059 2412542 ~ 2415193 (-)
LOC117599527 NA coding downstream 72918 2379889 ~ 2381334 (-)
LOC117599435 NA coding downstream 80948 2371624 ~ 2373304 (-)
LOC117599489 NA coding downstream 1042637 1411131 ~ 1411615 (-)
LOC117599471 LOC108261384,LOC108279477,LOC108261705,LOC108261423,LOC108261687,LOC108261555,LOC108261932,LOC108261610,LOC108262265 coding upstream 27302 2482383 ~ 2548694 (-)
LOC117599490 NA coding upstream 51506 2506587 ~ 2507094 (-)
LOC117599488 NA coding upstream 88066 2543147 ~ 2543631 (-)
LOC117599438 NA coding upstream 173584 2628665 ~ 2630328 (-)
LOC117599439 LOC108261384,LOC108279477,LOC108261932,LOC108261705,LOC108261610,LOC108261515,LOC108261687,LOC108261554,LOC108262337 coding upstream 209316 2664397 ~ 2667515 (-)
G275520 LOC108261384,LOC108262118,LOC108279477,LOC108261705,LOC108261400,LOC108261611,LOC108261423,LOC108444125,LOC108415949 non-coding downstream 17185 2436635 ~ 2437067 (-)
LOC117599475 LOC108279477 non-coding downstream 44148 2377505 ~ 2410104 (-)
LOC117599509 LOC108261384,LOC108261932,LOC108279477,LOC108261610,LOC108261705,LOC108261515,LOC108262337,LOC108261554 non-coding downstream 70794 2381342 ~ 2383458 (-)
G275504 NA non-coding downstream 181752 2272002 ~ 2272500 (-)
G275501 NA non-coding downstream 217139 2236032 ~ 2237113 (-)
LOC117599518 NA non-coding upstream 2560 2457641 ~ 2458841 (-)
LOC117599514 LOC108261932,LOC108261384,LOC108279477 non-coding upstream 3980 2459061 ~ 2460112 (-)
G275523 LOC108261400,LOC108261705,LOC108261423,LOC108261611,LOC108262466,LOC108261555,LOC108261384,LOC108279477 non-coding upstream 59663 2514744 ~ 2549652 (-)
G275524 LOC108261611,LOC108261423 non-coding upstream 80363 2535444 ~ 2569264 (-)
G275536 LOC108261384,LOC108261611,LOC108262118,LOC108279477 non-coding upstream 177345 2632426 ~ 2709379 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other downstream 342304 2089064 ~ 2111948 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other downstream 385123 2065674 ~ 2069129 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 392132 2061487 ~ 2062120 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 414190 2038235 ~ 2040062 (-)
LOC117599486 LOC108279477 other downstream 826989 1587770 ~ 1627263 (-)
G275981 NA other upstream 687453 3142534 ~ 3201297 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other upstream 771514 3226595 ~ 3335017 (-)
rps16 rps16 other upstream 844176 3299257 ~ 3384923 (-)
lin7a lin7a other upstream 975109 3430190 ~ 3494016 (-)
G276075 NA other upstream 1081916 3536997 ~ 3538743 (-)

Expression


Co-expression Network