LOC117599510


Basic Information

Item Value
gene id LOC117599510
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 629064 ~ 631387 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579923.1
TGGCAATGGTAGATGTGATCATCAGTGTTCCTGACTAAAATCTCAGtgCAAACTGCTGGGCGGAGATTACTATGATTCCCCACCCGTACTGATTTAATAAGttaaactgcccactgttcttcagaaaaatcctccatgTCCAGCacattctctgct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579923.1 True 156 ncRNA 0.44 3 629064 631387

Neighbor

gene id symbol gene type direction distance location
LOC117599469 LOC108262260 coding downstream 59053 481574 ~ 570011 (-)
LOC117599468 LOC108262260 coding downstream 153849 422513 ~ 475215 (-)
LOC117599422 LOC108279481,LOC108262260,LOC108279495 coding downstream 234811 376457 ~ 394253 (-)
cmah LOC108279485 coding downstream 464323 131691 ~ 164741 (-)
zdhhc17 zdhhc17,LOC102798393 coding downstream 521227 89473 ~ 107837 (-)
LOC117595727 LOC108262260 coding upstream 32338 663725 ~ 683075 (-)
LOC113543469 LOC108279491,LOC108262260 coding upstream 54649 686036 ~ 694483 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding upstream 273860 905247 ~ 906730 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding upstream 275843 907230 ~ 907847 (-)
LOC117599470 LOC107667668 coding upstream 543923 1175310 ~ 1177234 (-)
LOC117599521 NA non-coding downstream 95446 532826 ~ 533618 (-)
LOC117599492 NA non-coding downstream 98324 530099 ~ 530740 (-)
G275126 NA non-coding downstream 140142 487792 ~ 488922 (-)
G275141 NA non-coding downstream 180757 440793 ~ 448307 (-)
G275049 NA non-coding downstream 281615 347214 ~ 347449 (-)
G275167 cpsf6,LOC108279496,LOC107729149,LOC107555887,LOC106576649,LOC106593552 non-coding upstream 71944 703331 ~ 704306 (-)
G275168 NA non-coding upstream 72383 703770 ~ 705100 (-)
G275169 NA non-coding upstream 76944 708331 ~ 718266 (-)
G275170 NA non-coding upstream 87058 718445 ~ 719883 (-)
G275178 NA non-coding upstream 115063 746450 ~ 750995 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other downstream 60 560707 ~ 629004 (-)
LOC117599533 NA other downstream 28035 597414 ~ 601029 (-)
LOC117599529 NA other downstream 42246 583198 ~ 586818 (-)
LOC113531866 LOC108279481,LOC108262260,LOC108279491 other downstream 71377 403961 ~ 557687 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other downstream 89766 536446 ~ 539298 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 632362 1263749 ~ 1297899 (-)
LOC117599495 NA other upstream 651067 1282454 ~ 1282934 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 784518 1415905 ~ 1441145 (-)
G275420 NA other upstream 834472 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 956383 1587770 ~ 1627263 (-)

Expression


Co-expression Network