LOC117599518


Basic Information

Item Value
gene id LOC117599518
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2457641 ~ 2458841 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579931.1
tccctgaagaaacacactgactgctctcatgctggagtcacctgtgcagACCCATCAGTGCCGAGCACTATTACACCCACCTCAacaaccacctccaccaccaaaACAGTAAGAGCTGCTCCAAATCCTACATCACGAGctccatccacccctccactggttctcgttgtgttgggaacgctgctcttcctggccttagtgctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579931.1 True 204 lncRNA 0.53 3 2457641 2458841

Neighbor

gene id symbol gene type direction distance location
LOC117599505 NA coding downstream 2560 2454252 ~ 2455081 (-)
LOC117599531 NA coding downstream 28700 2428508 ~ 2428941 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding downstream 42448 2412542 ~ 2415193 (-)
LOC117599527 NA coding downstream 76307 2379889 ~ 2381334 (-)
LOC117599435 NA coding downstream 84337 2371624 ~ 2373304 (-)
LOC117599471 LOC108261384,LOC108279477,LOC108261705,LOC108261423,LOC108261687,LOC108261555,LOC108261932,LOC108261610,LOC108262265 coding upstream 23542 2482383 ~ 2548694 (-)
LOC117599490 NA coding upstream 47746 2506587 ~ 2507094 (-)
LOC117599488 NA coding upstream 84306 2543147 ~ 2543631 (-)
LOC117599438 NA coding upstream 169824 2628665 ~ 2630328 (-)
LOC117599439 LOC108261384,LOC108279477,LOC108261932,LOC108261705,LOC108261610,LOC108261515,LOC108261687,LOC108261554,LOC108262337 coding upstream 205556 2664397 ~ 2667515 (-)
G275520 LOC108261384,LOC108262118,LOC108279477,LOC108261705,LOC108261400,LOC108261611,LOC108261423,LOC108444125,LOC108415949 non-coding downstream 20574 2436635 ~ 2437067 (-)
LOC117599475 LOC108279477 non-coding downstream 47537 2377505 ~ 2410104 (-)
LOC117599509 LOC108261384,LOC108261932,LOC108279477,LOC108261610,LOC108261705,LOC108261515,LOC108262337,LOC108261554 non-coding downstream 74183 2381342 ~ 2383458 (-)
G275504 NA non-coding downstream 185141 2272002 ~ 2272500 (-)
G275501 NA non-coding downstream 220528 2236032 ~ 2237113 (-)
LOC117599514 LOC108261932,LOC108261384,LOC108279477 non-coding upstream 220 2459061 ~ 2460112 (-)
G275523 LOC108261400,LOC108261705,LOC108261423,LOC108261611,LOC108262466,LOC108261555,LOC108261384,LOC108279477 non-coding upstream 55903 2514744 ~ 2549652 (-)
G275524 LOC108261611,LOC108261423 non-coding upstream 76603 2535444 ~ 2569264 (-)
G275536 LOC108261384,LOC108261611,LOC108262118,LOC108279477 non-coding upstream 173585 2632426 ~ 2709379 (-)
G275815 NA non-coding upstream 375859 2834700 ~ 2845904 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other downstream 345693 2089064 ~ 2111948 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other downstream 388512 2065674 ~ 2069129 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 395521 2061487 ~ 2062120 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 417579 2038235 ~ 2040062 (-)
LOC117599486 LOC108279477 other downstream 830378 1587770 ~ 1627263 (-)
G275981 NA other upstream 683693 3142534 ~ 3201297 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other upstream 767754 3226595 ~ 3335017 (-)
rps16 rps16 other upstream 840416 3299257 ~ 3384923 (-)
lin7a lin7a other upstream 971349 3430190 ~ 3494016 (-)
G276075 NA other upstream 1078156 3536997 ~ 3538743 (-)

Expression


Co-expression Network