LOC117599520


Basic Information

Item Value
gene id LOC117599520
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1833446 ~ 1833855 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579933.1
atcattccctgaagaaacacactgactgctctcatgctggagtcacctgtgcagACTTATCTGTGTCCATCGCTATTACACCCACGTCAGAAacaaacacccccacaacaGtaaCTCAGTTAACAAGAACAACCACTCCAAGAACATCACCTGGTGctccatccacccctccactggttctcgttgtgttgggaacgctgctcttc

Function

GO:

id name namespace
GO:0047961 glycine N-acyltransferase activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
ko00340 Histidine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579933.1 True 206 lncRNA 0.50 3 1833446 1833855

Neighbor

gene id symbol gene type direction distance location
LOC117599489 NA coding downstream 421831 1411131 ~ 1411615 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding downstream 437502 1391900 ~ 1395944 (-)
LOC117599496 NA coding downstream 444768 1388196 ~ 1388678 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding downstream 457127 1366111 ~ 1376319 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 578260 1242138 ~ 1255186 (-)
LOC117599435 NA coding upstream 537769 2371624 ~ 2373304 (-)
LOC117599527 NA coding upstream 546034 2379889 ~ 2381334 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding upstream 578687 2412542 ~ 2415193 (-)
LOC117599531 NA coding upstream 594653 2428508 ~ 2428941 (-)
LOC117599505 NA coding upstream 620397 2454252 ~ 2455081 (-)
LOC117599478 LOC108279477,LOC108261932 non-coding downstream 663 1826816 ~ 1832783 (-)
LOC117599500 NA non-coding downstream 117707 1714892 ~ 1715739 (-)
LOC117599499 NA non-coding downstream 141272 1691307 ~ 1692174 (-)
LOC117599504 NA non-coding downstream 145767 1687208 ~ 1687679 (-)
LOC117599523 LOC108261687,LOC108279477,LOC108261423,LOC108261555,LOC108261705,LOC108261384,LOC108262466 non-coding downstream 201124 1631739 ~ 1632322 (-)
G275457 NA non-coding upstream 27642 1861497 ~ 1906414 (-)
G275465 NA non-coding upstream 91172 1925027 ~ 2079405 (-)
LOC117599506 NA non-coding upstream 92478 1926333 ~ 1927161 (-)
LOC117599517 NA non-coding upstream 97075 1930930 ~ 1932174 (-)
LOC117599628 NA non-coding upstream 183204 2017059 ~ 2017165 (-)
LOC117599486 LOC108279477 other downstream 206183 1587770 ~ 1627263 (-)
G275420 NA other downstream 255930 1465859 ~ 1577516 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other downstream 392301 1415905 ~ 1441145 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 535547 1263749 ~ 1297899 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 204380 2038235 ~ 2040062 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other upstream 227632 2061487 ~ 2062120 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other upstream 231819 2065674 ~ 2069129 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other upstream 255209 2089064 ~ 2111948 (-)
G275981 NA other upstream 1308679 3142534 ~ 3201297 (-)

Expression


Co-expression Network