LOC117599523 (LOC108261687,LOC108279477,LOC108261423,LOC108261555,LOC108261705,LOC108261384,LOC108262466)


Basic Information

Item Value
gene id LOC117599523
gene name LOC108261687,LOC108279477,LOC108261423,LOC108261555,LOC108261705,LOC108261384,LOC108262466
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1631739 ~ 1632322 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579936.1
caaactgctcccattacaacgatgtgggattaatatgttctgAGTTACAGCTGGTGAACGGATCGGACTCCTGTTCTGGTCGAGTGGAGCTCCAGTACCTCAGTGAGTGgggcacagtttgtgctgtaggctgggatatgagagctgcagatgttctctgtgcacagctggattgtgggagtgctgtggctgtggtggaggtggactggtttggggaggggagtggccacatctgggctgatgtgtttgattgtcaggggaAGGAGACACACCTATCACAATGTGGCAACTCATCATGGAGTGGAGCTGcatgctctcataaacacgatgctggagtcatctgtaacGgatcatccGTGGCGTTTCATGAGGGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579936.1 True 376 lncRNA 0.53 3 1631739 1632322

Neighbor

gene id symbol gene type direction distance location
LOC117599489 NA coding downstream 220124 1411131 ~ 1411615 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding downstream 235795 1391900 ~ 1395944 (-)
LOC117599496 NA coding downstream 243061 1388196 ~ 1388678 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding downstream 255420 1366111 ~ 1376319 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 376553 1242138 ~ 1255186 (-)
LOC117599435 NA coding upstream 739302 2371624 ~ 2373304 (-)
LOC117599527 NA coding upstream 747567 2379889 ~ 2381334 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding upstream 780220 2412542 ~ 2415193 (-)
LOC117599531 NA coding upstream 796186 2428508 ~ 2428941 (-)
LOC117599505 NA coding upstream 821930 2454252 ~ 2455081 (-)
LOC117599524 NA non-coding downstream 2158 1629023 ~ 1629581 (-)
LOC117599525 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 non-coding downstream 37775 1593154 ~ 1593964 (-)
LOC117599485 NA non-coding downstream 41941 1589313 ~ 1589798 (-)
G275419 LOC108261384,LOC108261611,LOC108279477 non-coding downstream 58417 1459923 ~ 1573322 (-)
LOC117599633 NA non-coding downstream 135571 1496062 ~ 1496168 (-)
LOC117599504 NA non-coding upstream 54886 1687208 ~ 1687679 (-)
LOC117599499 NA non-coding upstream 58985 1691307 ~ 1692174 (-)
LOC117599500 NA non-coding upstream 82570 1714892 ~ 1715739 (-)
LOC117599478 LOC108279477,LOC108261932 non-coding upstream 194494 1826816 ~ 1832783 (-)
LOC117599520 NA non-coding upstream 201124 1833446 ~ 1833855 (-)
LOC117599486 LOC108279477 other downstream 4476 1587770 ~ 1627263 (-)
G275420 NA other downstream 54223 1465859 ~ 1577516 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other downstream 190594 1415905 ~ 1441145 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 333840 1263749 ~ 1297899 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 405913 2038235 ~ 2040062 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other upstream 429165 2061487 ~ 2062120 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other upstream 433352 2065674 ~ 2069129 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other upstream 456742 2089064 ~ 2111948 (-)
G275981 NA other upstream 1510212 3142534 ~ 3201297 (-)

Expression


Co-expression Network