LOC117599524


Basic Information

Item Value
gene id LOC117599524
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1629023 ~ 1629581 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579937.1
agaaacacactgactgctctcatgctggagtcacctgtgcagACATATCCACCGTGTCCACTACTGCTACAcccaccaccacaaccaccacaACACCCACCACCACCAAATCAGTAAGAGCCGCTTCAAATCCTACATCACCTGGAGctccatccacccctccactggttctcgttgtgttgggaacgctgctcttcctggccttagtgcttctgctggtactgttttaccaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579937.1 True 234 lncRNA 0.53 3 1629023 1629581

Neighbor

gene id symbol gene type direction distance location
LOC117599489 NA coding downstream 217408 1411131 ~ 1411615 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding downstream 233079 1391900 ~ 1395944 (-)
LOC117599496 NA coding downstream 240345 1388196 ~ 1388678 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding downstream 252704 1366111 ~ 1376319 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 373837 1242138 ~ 1255186 (-)
LOC117599435 NA coding upstream 742043 2371624 ~ 2373304 (-)
LOC117599527 NA coding upstream 750308 2379889 ~ 2381334 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding upstream 782961 2412542 ~ 2415193 (-)
LOC117599531 NA coding upstream 798927 2428508 ~ 2428941 (-)
LOC117599505 NA coding upstream 824671 2454252 ~ 2455081 (-)
LOC117599525 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 non-coding downstream 35059 1593154 ~ 1593964 (-)
LOC117599485 NA non-coding downstream 39225 1589313 ~ 1589798 (-)
G275419 LOC108261384,LOC108261611,LOC108279477 non-coding downstream 55701 1459923 ~ 1573322 (-)
LOC117599633 NA non-coding downstream 132855 1496062 ~ 1496168 (-)
G275416 LOC108279477,LOC108261384,LOC108261705,LOC108261687,LOC108261555,LOC108262265,LOC108261423,LOC108444129,LOC108412318 non-coding downstream 170824 1441239 ~ 1458199 (-)
LOC117599523 LOC108261687,LOC108279477,LOC108261423,LOC108261555,LOC108261705,LOC108261384,LOC108262466 non-coding upstream 2158 1631739 ~ 1632322 (-)
LOC117599504 NA non-coding upstream 57627 1687208 ~ 1687679 (-)
LOC117599499 NA non-coding upstream 61726 1691307 ~ 1692174 (-)
LOC117599500 NA non-coding upstream 85311 1714892 ~ 1715739 (-)
LOC117599478 LOC108279477,LOC108261932 non-coding upstream 197235 1826816 ~ 1832783 (-)
LOC117599486 LOC108279477 other downstream 1760 1587770 ~ 1627263 (-)
G275420 NA other downstream 51507 1465859 ~ 1577516 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other downstream 187878 1415905 ~ 1441145 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 331124 1263749 ~ 1297899 (-)
LOC117599495 NA other downstream 346089 1282454 ~ 1282934 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 408654 2038235 ~ 2040062 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other upstream 431906 2061487 ~ 2062120 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other upstream 436093 2065674 ~ 2069129 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other upstream 459483 2089064 ~ 2111948 (-)
G275981 NA other upstream 1512953 3142534 ~ 3201297 (-)

Expression


Co-expression Network