LOC117599528


Basic Information

Item Value
gene id LOC117599528
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2106397 ~ 2107206 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579941.1
CCCACCTCAacaaccacctccaccaccaaaACAGTAAGAGCGGCTCCAAATCCTACATCACCTGGAGctccatccacccctccactggttctcgttgtgttgggaacgctgctcttcctggccttagtgcttctgctggtactgttttaccagaacagagtgctcaggagagttgtctctaagaggaggcgtaagactcagcctgaggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579941.1 True 209 lncRNA 0.54 3 2106397 2107206

Neighbor

gene id symbol gene type direction distance location
LOC117599489 NA coding downstream 694782 1411131 ~ 1411615 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding downstream 710453 1391900 ~ 1395944 (-)
LOC117599496 NA coding downstream 717719 1388196 ~ 1388678 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding downstream 730078 1366111 ~ 1376319 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 851211 1242138 ~ 1255186 (-)
LOC117599435 NA coding upstream 264418 2371624 ~ 2373304 (-)
LOC117599527 NA coding upstream 272683 2379889 ~ 2381334 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding upstream 305336 2412542 ~ 2415193 (-)
LOC117599531 NA coding upstream 321302 2428508 ~ 2428941 (-)
LOC117599505 NA coding upstream 347046 2454252 ~ 2455081 (-)
LOC117599507 NA non-coding downstream 25620 2079950 ~ 2080777 (-)
G275465 NA non-coding downstream 26992 1925027 ~ 2079405 (-)
LOC117599519 NA non-coding downstream 46467 2058728 ~ 2059930 (-)
LOC117599487 NA non-coding downstream 52215 2053698 ~ 2054182 (-)
LOC117599628 NA non-coding downstream 89232 2017059 ~ 2017165 (-)
G275488 NA non-coding upstream 8003 2115209 ~ 2116471 (-)
LOC117599508 NA non-coding upstream 120911 2228117 ~ 2228945 (-)
G275500 NA non-coding upstream 124232 2231438 ~ 2232746 (-)
G275501 NA non-coding upstream 128826 2236032 ~ 2237113 (-)
G275504 NA non-coding upstream 164796 2272002 ~ 2272500 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other downstream 37268 2065674 ~ 2069129 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 44277 2061487 ~ 2062120 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 66335 2038235 ~ 2040062 (-)
LOC117599486 LOC108279477 other downstream 479134 1587770 ~ 1627263 (-)
G275420 NA other downstream 528881 1465859 ~ 1577516 (-)
G275981 NA other upstream 1035328 3142534 ~ 3201297 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other upstream 1119389 3226595 ~ 3335017 (-)
rps16 rps16 other upstream 1192051 3299257 ~ 3384923 (-)
lin7a lin7a other upstream 1322984 3430190 ~ 3494016 (-)
G276075 NA other upstream 1429791 3536997 ~ 3538743 (-)

Expression


Co-expression Network