LOC117599529


Basic Information

Item Value
gene id LOC117599529
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 583198 ~ 586818 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579942.1
TTCTGAGAACTGGAGACTCAAACATACTCGGTTTCTTCTCCAGGTGATCTTTCCTGAGCAGAGAAATGAAATCAGTGGAGAAACTCATCATCTTTTATTCTCTGTTTCAAGgaatgattgtgtgtatgtgtgtgtgtg

Function

GO: NA

KEGG:

id description
ko00040 Pentose and glucuronate interconversions
ko00053 Ascorbate and aldarate metabolism
ko00340 Histidine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579942.1 True 138 ncRNA 0.40 3 583198 586818

Neighbor

gene id symbol gene type direction distance location
LOC117599469 LOC108262260 coding downstream 13187 481574 ~ 570011 (-)
LOC117599468 LOC108262260 coding downstream 107983 422513 ~ 475215 (-)
LOC117599422 LOC108279481,LOC108262260,LOC108279495 coding downstream 188945 376457 ~ 394253 (-)
cmah LOC108279485 coding downstream 418457 131691 ~ 164741 (-)
zdhhc17 zdhhc17,LOC102798393 coding downstream 475361 89473 ~ 107837 (-)
LOC117595727 LOC108262260 coding upstream 76907 663725 ~ 683075 (-)
LOC113543469 LOC108279491,LOC108262260 coding upstream 99218 686036 ~ 694483 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding upstream 318429 905247 ~ 906730 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding upstream 320412 907230 ~ 907847 (-)
LOC117599470 LOC107667668 coding upstream 588492 1175310 ~ 1177234 (-)
LOC117599521 NA non-coding downstream 49580 532826 ~ 533618 (-)
LOC117599492 NA non-coding downstream 52458 530099 ~ 530740 (-)
G275126 NA non-coding downstream 94276 487792 ~ 488922 (-)
G275141 NA non-coding downstream 134891 440793 ~ 448307 (-)
G275049 NA non-coding downstream 235749 347214 ~ 347449 (-)
G275167 cpsf6,LOC108279496,LOC107729149,LOC107555887,LOC106576649,LOC106593552 non-coding upstream 116513 703331 ~ 704306 (-)
G275168 NA non-coding upstream 116952 703770 ~ 705100 (-)
G275169 NA non-coding upstream 121513 708331 ~ 718266 (-)
G275170 NA non-coding upstream 131627 718445 ~ 719883 (-)
G275178 NA non-coding upstream 159632 746450 ~ 750995 (-)
LOC113531866 LOC108279481,LOC108262260,LOC108279491 other downstream 25511 403961 ~ 557687 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other downstream 43900 536446 ~ 539298 (-)
LOC113532194 far1,LOC108279482,LOC107590516,LOC103366393 other downstream 58173 514984 ~ 525025 (-)
LOC113531599 LOC108262260,LOC108279491,LOC108279481 other downstream 214161 354974 ~ 369037 (-)
LOC113535352 LOC107729140 other downstream 296146 281434 ~ 287052 (-)
LOC117599533 NA other upstream 10596 597414 ~ 601029 (-)
LOC117599510 NA other upstream 42246 629064 ~ 631387 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 676931 1263749 ~ 1297899 (-)
LOC117599495 NA other upstream 695636 1282454 ~ 1282934 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 829087 1415905 ~ 1441145 (-)

Expression


Co-expression Network