LOC117599531


Basic Information

Item Value
gene id LOC117599531
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2428508 ~ 2428941 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579944.1
ggatgtggatgatgagcttctctcagTAGAGTCTGGTATTGGAGAAAAGGATgagtattatgatgatgtcatcgacaccagtgacttcataagtgaTACAGGAAGAGTTGACCCACCAGAGGACTACGATGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579944.1 True 134 ncRNA 0.44 3 2428508 2428941

Neighbor

gene id symbol gene type direction distance location
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding downstream 13315 2412542 ~ 2415193 (-)
LOC117599527 NA coding downstream 47174 2379889 ~ 2381334 (-)
LOC117599435 NA coding downstream 55204 2371624 ~ 2373304 (-)
LOC117599489 NA coding downstream 1016893 1411131 ~ 1411615 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding downstream 1032564 1391900 ~ 1395944 (-)
LOC117599505 NA coding upstream 25311 2454252 ~ 2455081 (-)
LOC117599471 LOC108261384,LOC108279477,LOC108261705,LOC108261423,LOC108261687,LOC108261555,LOC108261932,LOC108261610,LOC108262265 coding upstream 53442 2482383 ~ 2548694 (-)
LOC117599490 NA coding upstream 77646 2506587 ~ 2507094 (-)
LOC117599488 NA coding upstream 114206 2543147 ~ 2543631 (-)
LOC117599438 NA coding upstream 199724 2628665 ~ 2630328 (-)
LOC117599475 LOC108279477 non-coding downstream 18404 2377505 ~ 2410104 (-)
LOC117599509 LOC108261384,LOC108261932,LOC108279477,LOC108261610,LOC108261705,LOC108261515,LOC108262337,LOC108261554 non-coding downstream 45050 2381342 ~ 2383458 (-)
G275504 NA non-coding downstream 156008 2272002 ~ 2272500 (-)
G275501 NA non-coding downstream 191395 2236032 ~ 2237113 (-)
G275500 NA non-coding downstream 195762 2231438 ~ 2232746 (-)
G275520 LOC108261384,LOC108262118,LOC108279477,LOC108261705,LOC108261400,LOC108261611,LOC108261423,LOC108444125,LOC108415949 non-coding upstream 7694 2436635 ~ 2437067 (-)
LOC117599518 NA non-coding upstream 28700 2457641 ~ 2458841 (-)
LOC117599514 LOC108261932,LOC108261384,LOC108279477 non-coding upstream 30120 2459061 ~ 2460112 (-)
G275523 LOC108261400,LOC108261705,LOC108261423,LOC108261611,LOC108262466,LOC108261555,LOC108261384,LOC108279477 non-coding upstream 85803 2514744 ~ 2549652 (-)
G275524 LOC108261611,LOC108261423 non-coding upstream 106503 2535444 ~ 2569264 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other downstream 316560 2089064 ~ 2111948 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other downstream 359379 2065674 ~ 2069129 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 366388 2061487 ~ 2062120 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 388446 2038235 ~ 2040062 (-)
LOC117599486 LOC108279477 other downstream 801245 1587770 ~ 1627263 (-)
G275981 NA other upstream 713593 3142534 ~ 3201297 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other upstream 797654 3226595 ~ 3335017 (-)
rps16 rps16 other upstream 870316 3299257 ~ 3384923 (-)
lin7a lin7a other upstream 1001249 3430190 ~ 3494016 (-)
G276075 NA other upstream 1108056 3536997 ~ 3538743 (-)

Expression


Co-expression Network