LOC117599532


Basic Information

Item Value
gene id LOC117599532
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1241367 ~ 1241904 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579945.1
gaaacacactgactgctctcatgctggagtcacctgtgcagacaTATCCACCGTGTCCATTACTGCTACACCCaccacaacaaccaccacaacaaccaccaccaccaccaaatcagTAAGAGCCACTCCAAATCCCACATCACCTGGAGctccatccacccctccactggttctcgttgtgttgggaacgctgctcttcctggccttagtgct

Function

GO:

id name namespace
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579945.1 True 213 lncRNA 0.54 3 1241367 1241904

Neighbor

gene id symbol gene type direction distance location
LOC117599470 LOC107667668 coding downstream 64133 1175310 ~ 1177234 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding downstream 333520 907230 ~ 907847 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding downstream 334637 905247 ~ 906730 (-)
LOC113543469 LOC108279491,LOC108262260 coding downstream 546884 686036 ~ 694483 (-)
LOC117595727 LOC108262260 coding downstream 558292 663725 ~ 683075 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding upstream 234 1242138 ~ 1255186 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding upstream 124207 1366111 ~ 1376319 (-)
LOC117599496 NA coding upstream 146292 1388196 ~ 1388678 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding upstream 149996 1391900 ~ 1395944 (-)
LOC117599489 NA coding upstream 169227 1411131 ~ 1411615 (-)
G275393 NA non-coding downstream 92603 1145605 ~ 1148764 (-)
LOC117599494 NA non-coding downstream 108798 1132088 ~ 1132569 (-)
LOC117599477 LOC108279477 non-coding downstream 339527 900773 ~ 901840 (-)
LOC117599491 NA non-coding downstream 363113 877038 ~ 878254 (-)
LOC117599484 NA non-coding downstream 370892 869990 ~ 870475 (-)
LOC117599476 LOC108279477 non-coding upstream 19738 1261642 ~ 1262710 (-)
LOC117599498 NA non-coding upstream 50261 1292165 ~ 1293976 (-)
G275408 NA non-coding upstream 144648 1386552 ~ 1433883 (-)
G275369 LOC108261400,LOC108279477,LOC108261423,LOC108262466,LOC108261705,LOC108261384,LOC108261555,LOC108261687,LOC108261611 non-coding upstream 154535 1396439 ~ 1462056 (-)
G275412 NA non-coding upstream 171488 1413392 ~ 1454206 (-)
LOC117599510 NA other downstream 609980 629064 ~ 631387 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other downstream 612363 560707 ~ 629004 (-)
LOC117599533 NA other downstream 640338 597414 ~ 601029 (-)
LOC117599529 NA other downstream 654549 583198 ~ 586818 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other downstream 702069 536446 ~ 539298 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 21845 1263749 ~ 1297899 (-)
LOC117599495 NA other upstream 40550 1282454 ~ 1282934 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 174001 1415905 ~ 1441145 (-)
G275420 NA other upstream 223955 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 345866 1587770 ~ 1627263 (-)

Expression


Co-expression Network