LOC117599533


Basic Information

Item Value
gene id LOC117599533
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 597414 ~ 601029 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579946.1
TTCTGAGAACTGGAGACTCAAACATACTCGGTTTCTTCTCCAGGTGATCTTTCCTGAGCAGAGAAATGAAATCAGTGGAGAAACTCATCATCTTTTATTCTCTGTTTCAAGgaatgattgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579946.1 True 124 ncRNA 0.40 3 597414 601029

Neighbor

gene id symbol gene type direction distance location
LOC117599469 LOC108262260 coding downstream 27403 481574 ~ 570011 (-)
LOC117599468 LOC108262260 coding downstream 122199 422513 ~ 475215 (-)
LOC117599422 LOC108279481,LOC108262260,LOC108279495 coding downstream 203161 376457 ~ 394253 (-)
cmah LOC108279485 coding downstream 432673 131691 ~ 164741 (-)
zdhhc17 zdhhc17,LOC102798393 coding downstream 489577 89473 ~ 107837 (-)
LOC117595727 LOC108262260 coding upstream 62696 663725 ~ 683075 (-)
LOC113543469 LOC108279491,LOC108262260 coding upstream 85007 686036 ~ 694483 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding upstream 304218 905247 ~ 906730 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding upstream 306201 907230 ~ 907847 (-)
LOC117599470 LOC107667668 coding upstream 574281 1175310 ~ 1177234 (-)
LOC117599521 NA non-coding downstream 63796 532826 ~ 533618 (-)
LOC117599492 NA non-coding downstream 66674 530099 ~ 530740 (-)
G275126 NA non-coding downstream 108492 487792 ~ 488922 (-)
G275141 NA non-coding downstream 149107 440793 ~ 448307 (-)
G275049 NA non-coding downstream 249965 347214 ~ 347449 (-)
G275167 cpsf6,LOC108279496,LOC107729149,LOC107555887,LOC106576649,LOC106593552 non-coding upstream 102302 703331 ~ 704306 (-)
G275168 NA non-coding upstream 102741 703770 ~ 705100 (-)
G275169 NA non-coding upstream 107302 708331 ~ 718266 (-)
G275170 NA non-coding upstream 117416 718445 ~ 719883 (-)
G275178 NA non-coding upstream 145421 746450 ~ 750995 (-)
LOC117599529 NA other downstream 10596 583198 ~ 586818 (-)
LOC113531866 LOC108279481,LOC108262260,LOC108279491 other downstream 39727 403961 ~ 557687 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other downstream 58116 536446 ~ 539298 (-)
LOC113532194 far1,LOC108279482,LOC107590516,LOC103366393 other downstream 72389 514984 ~ 525025 (-)
LOC113531599 LOC108262260,LOC108279491,LOC108279481 other downstream 228377 354974 ~ 369037 (-)
LOC117599510 NA other upstream 28035 629064 ~ 631387 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 662720 1263749 ~ 1297899 (-)
LOC117599495 NA other upstream 681425 1282454 ~ 1282934 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 814876 1415905 ~ 1441145 (-)
G275420 NA other upstream 864830 1465859 ~ 1577516 (-)

Expression


Co-expression Network