XLOC_005286 (ccz1)


Basic Information

Item Value
gene id XLOC_005286
gene name ccz1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 17657224 ~ 17686404 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010155
ATCTACCCGAGTGGATGTAGCTGTAACACACAGGCGAGTGTCAAGAGCAGGAAGTACATCTTATTCAGTGATCTCAGCTCTGTTTTCCCTCATGAGATAACAAATCAAGACCTTTATTTCTGTTGTCATGGTGTAACAGGTAAAAGGCATGAATGCCAAGCTCAATGAAAAAAGAGGGAACCGCTGACACAGACCACACTAATGCTGATGATCAGCCCAAGAATGGCATCTGGAATGCAAGAGAAACAGTACACACCGTCTTTGCTCAGTTTTTTCATCTATAACCCTAAGTTTGGCCCACGGGAAGGAGAGGAGGAAAAGAAAATTTTGTTTTACCACCCCATTGAAATAGAGAAGAACGAGAAGATTCGCAATGTTGGACTCTGTGAGGCCATTGTTCAGTTCACCAGAACATTCTGTCCTACAAAACCAGCCAAATCCCTTCATACTCAGAAGAACAGACAGTTTTTCCATGAGCCAGAGGAAAATTACTGGATGGTCATGGTTGTTCGGAATCCAATGGTTGAAAAACCCAACAAAGATGGCAAACCACCCACTGTAGAATATCAAGAGGAAGAGATTATtGATTCAGTTTATGGGTCTGTACTACAGCAGTGCTACAGCATGTATAAGCTCTTCAACGGGACGTTCAGCAGGGCGTTTGAGGCTGGTGGAGTGGAACTGCTTACCCAAAAGCTCGAAAAGTTCTTTTACAGGTATCTGCAGACGCTTCATCTCCAGTCATGTGACCTGCTGGATGTGTTCGGAGGAATCAGTTTTTTCCCTCTGGACAAGATGACCTATCTGAAGATCCAGTCCTTTGTCAATAGAGTAGAAGAAAGCTTGAGTTTGGTCAAATACACAGCCTTCCTATACAACGACCAGCTGATCTGgAGTGGTCTAGAGCAGGATGACATGCGTATTCTGTACAAATACCTGACAACCTCACTGTTCCCGCGGCACACTGAACCTGAGCTTGCAGGAAGAGACTCTCCCCTCAGGCCAGAGGTGGCTGGGAATCTGTTGCACTATGGGAGATTTTTAACAGGACCAGCAAATCTTAAAGATCCAGAGGCAAAATTCAGATTTCCCAGGATATTTGTAAACACAGAGGACAGTTACGAGGAGCTACATTTGATTGTTTACAAGGCAATGAGTGCAGCTGTATGCTTCATGATAAATGCCTCGGTGGATTTGAATCGGGAGTTTTGTGAGAAATTAGACAGCTTGGTTGGACCCCAACTCACCCTGCTGGCCTCTGACATATGTGAACAGTACAACATCAACCGCAGGATATCAGGGCCAGAGAAGGAGCCTCAGTTTAAATTCATCTACTTCAACCACATGAACTTGGCTGAGAAAAGCACCATCCACATGCGCAAGACGGCCAGTGTTTCCCTCACCTCTGTCCATCCGGACCTCATGAAAATTCTCGGAGACATCAACTGCGATTTTGCACGGGTTGATGAGGATGAGGAAATCATTGTCAAAGCGATGACCGATTACTGGGTTGTTGGAAAGAAGTCTGATCAGAGGGAGCTCTACGTCATTTTGAACCAGAAGAATGCCAACCTCATCGAAGTGAATGAGGAAGTGAAAAGGCTTTGTGCGACGcaattcaataatatttttttcttggacTGAAGAGATATGATGGGCATGGACTACTTCACTACACTAAAACTGTCAACTGTTCAGGTTTTACTGACAGCATCAGTGTAATGCAAtaattgcattgtaaaaaaagatttttcacaTCATgcaattttttagatttttatttaatctatacaGAAATGTGGTTGCTTCCTtggaattaattataaaaatctgaattttactGTAATTACCTCTTTCCATTTGTTTGTATGTACATATTGTCGTTTAAGTATCATCTATGCTTTTTTGTGTTTCATTCCCGTTCTTCAGAATTGTTTTATCACTTACAGATATGATTAAGTTGACATTAAGAATATGAAACTGTCAAGCTATGTGTTTCtcttatttttaaatgctttcatgTCGTCGGTATCATGGTTTAACACGCATTACTTCAAAATAAATTGCAATTTTCATTAAA

Function

symbol description
ccz1 Predicted to be involved in vesicle-mediated transport. Predicted to be located in lysosomal membrane. Predicted to be part of Mon1-Ccz1 complex. Predicted to be active in intracellular membrane-bounded organelle. Orthologous to several human genes including CCZ1 (CCZ1 homolog, vacuolar protein trafficking and biogenesis associated).

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0035658 Mon1-Ccz1 complex cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04138 Autophagy - yeast
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-698 Predicted to be involved in vesicle-mediated transport. Predicted to be located in lysosomal membrane. Predicted to be part of Mon1-Ccz1 complex. Predicted to be active in intracellular membrane-bounded organelle. Orthologous to several human genes including CCZ1 (CCZ1 homolog, vacuolar protein trafficking and biogenesis associated).

Ensembl:

ensembl_id ENSDARG00000056559

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010155 True 2080 mRNA 0.42 17 17657224 17686404

Neighbor

gene id symbol gene type direction distance location
XLOC_005285 dlgap5 coding downstream 1541 17633354 ~ 17655683 (-)
XLOC_005284 usp42 coding downstream 54266 17570675 ~ 17602958 (-)
XLOC_005283 minpp1b coding downstream 164339 17482607 ~ 17492885 (-)
XLOC_005282 papss2b coding downstream 178146 17458949 ~ 17479078 (-)
XLOC_005281 ptenb coding downstream 233050 17399852 ~ 17424174 (-)
XLOC_005287 pvalb9 coding upstream 9582 17695986 ~ 17698669 (-)
XLOC_005288 pvalb3 coding upstream 18814 17705218 ~ 17707517 (-)
XLOC_005289 dre-mir-2192 coding upstream 20388 17706792 ~ 17706901 (-)
XLOC_005290 pvalb2 coding upstream 24021 17710425 ~ 17712498 (-)
XLOC_005291 NA coding upstream 35397 17721801 ~ 17727540 (-)
XLOC_005275 BX000534.1 non-coding downstream 658782 16997206 ~ 16998442 (-)
XLOC_005273 NA non-coding downstream 690416 16964656 ~ 16966808 (-)
XLOC_005272 NA non-coding downstream 713976 16942204 ~ 16943248 (-)
XLOC_005269 BX000534.2 non-coding downstream 755465 16901645 ~ 16901759 (-)
XLOC_005265 BX322603.1 non-coding downstream 910677 16743052 ~ 16746547 (-)
XLOC_005295 NA non-coding upstream 538130 18224534 ~ 18227730 (-)
XLOC_005298 NA non-coding upstream 766803 18453207 ~ 18454407 (-)
XLOC_005303 AL772266.1 non-coding upstream 1052009 18738413 ~ 18738529 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_01115076_01126539 CCZ1 coding CI01000063 null 1114647 ~ 1126539 (-)
rainbow trout (Oncorhynchus mykiss) G1676051 ccz1 unknown NC_048584.1 CM023238.2 23329897 ~ 23332080 (-)
bowfin (Amia calva) AMCG00018418 ccz1,LOC103028980 coding CM030135.1 CM030135.1 10174420 ~ 10189358 (-)