LOC117599568


Basic Information

Item Value
gene id LOC117599568
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 20736968 ~ 20749220 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579968.1
CAGGAGGCCCTGACTCCCTCTCAGCACTGTCAGCTTTAAAGAGTGGGACTCTTATATACGGAACAGAGCTGGACATTTCTGTCTACATTCATCAAAACTGTGGATCTGACCATTAAAAGCAATGATGGGACTGCAATGGTCCAGAAGgtTTGTGACTGCAGCGGATATCATGGTCAAAGcatcaggggtggaaaatacttgagtaattgtacttcgTTATTATActataagtattattttggggtatttatactttatttgtgtgttattaaagtTGAGTACTTGTACTCTTAATTgcattttcaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579968.1 True 308 lncRNA 0.39 3 20736968 20749220

Neighbor

gene id symbol gene type direction distance location
mkrn1 mkrn1,LOC107725576 coding downstream 7331 20715040 ~ 20729637 (-)
tmem121b cecr6 coding downstream 24049 20709969 ~ 20712919 (-)
lmo3 lmo3,LOC107550907,LOC107757261 coding downstream 236061 20459629 ~ 20500907 (-)
trnaa-ugc_16 NA coding downstream 314496 20422401 ~ 20422472 (-)
wif1 wif1,LOC107655595 coding downstream 480421 20242908 ~ 20256547 (-)
tmem178b tmem178b,LOC107725619,LOC107694293 coding upstream 43253 20792473 ~ 20894630 (-)
btbd11a btbd11a,btbd11,LOC108279962,LOC108426402,LOC107757250,LOC107725623,LOC107655613,LOC107694300,LOC105027830 coding upstream 190525 20939745 ~ 21133493 (-)
si:dkey-222f8.3 LOC108279736 coding upstream 415486 21164706 ~ 21172260 (-)
LOC113531875 LOC108279736 coding upstream 424964 21174184 ~ 21179511 (-)
ppfibp1a LOC108279739,LOC108426406 coding upstream 440705 21189925 ~ 21226343 (-)
G285791 NA non-coding downstream 158485 20578256 ~ 20578483 (-)
G285693 NA non-coding downstream 295040 20440221 ~ 20441928 (-)
G285642 NA non-coding downstream 333711 20403022 ~ 20403257 (-)
G285641 NA non-coding downstream 334646 20401834 ~ 20402322 (-)
G285630 NA non-coding downstream 346542 20389735 ~ 20390426 (-)
G285859 NA non-coding upstream 546 20749766 ~ 20752267 (-)
G285907 NA non-coding upstream 147061 20896281 ~ 20896487 (-)
G285911 NA non-coding upstream 156203 20905423 ~ 20905658 (-)
G285934 NA non-coding upstream 179301 20928521 ~ 20930920 (-)
G286192 tnnt2c,LOC107560724,LOC107655611 non-coding upstream 355588 21104808 ~ 21162920 (-)
G285607 NA other downstream 416918 20313067 ~ 20320050 (-)
rap1b rap1b,LOC106576640,LOC107695907 other downstream 1001736 19678283 ~ 19735232 (-)
LOC113532190 NA other downstream 1989135 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 2524575 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 2525264 18156824 ~ 18211704 (-)
LOC113544587 NA other upstream 711606 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 1737016 22486236 ~ 22489467 (-)

Expression


Co-expression Network