LOC117599571


Basic Information

Item Value
gene id LOC117599571
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5315907 ~ 5326714 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579974.1
TCAGGAAGAGGTATAATAAATGTCAGCTTCAGCTCCACAGCTGATCCAGGAGCCACTGCAGTCACTCTCACTCCAGATCCAGTCCAGACTTTACATTTCTCTAATTCACCTGAGCTCTAACTCACCTGTTTCTCATTTCCTGTTCATTTAAACAGCTCTCATTCACTCAGTTATTTGTTAGGGCTTGTCATTTCCTTTAGATTCGTAATTCTAAGTGGTTCTCGCTTTGTTTTCAtggttttgacttttttcttcCTTGCTATTTTTCCTCTGTTTGCTTGATTGTTTGAACTTTATCCTTTTCTTAATTATGCTTCTTCCTGCTGGTTTGTATTGTTATTAAAGATTACTTACAGCTACATCCAACTGAGTTCATGACAGCAATGAGTGGTGTGCCAGTTTGTCGGCTGTAACGTGATATTCCAGCAGGAGTGccCGATGACCAGTCCGGAGATTTCACCTCATCCCTGAGCGCGcgcgcaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579974.1 True 484 lncRNA 0.42 3 5315907 5326714

Neighbor

gene id symbol gene type direction distance location
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding downstream 312116 4988481 ~ 5003791 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding downstream 350814 4954291 ~ 4965093 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding downstream 377094 4925716 ~ 4938813 (-)
gys2 gys2,LOC107659841,LOC107694689 coding downstream 398127 4897270 ~ 4917780 (-)
psmc2 psmc2,LOC103382982 coding downstream 523110 4784128 ~ 4792797 (-)
bcat1 bcat1,LOC107725514,LOC107659834,LOC107587341 coding upstream 13059 5339773 ~ 5361979 (-)
casc1 casc1 coding upstream 78760 5405474 ~ 5419057 (-)
parpbp parpbp coding upstream 137599 5464313 ~ 5487007 (-)
th2 LOC108279869,LOC108437952,LOC107695848 coding upstream 187368 5514082 ~ 5528820 (-)
pah pah coding upstream 202442 5529156 ~ 5550953 (-)
G276985 NA non-coding downstream 190429 5124473 ~ 5125478 (-)
G276980 NA non-coding downstream 204939 5106880 ~ 5110968 (-)
LOC113531850 NA non-coding downstream 370629 4943549 ~ 4945278 (-)
G276753 NA non-coding downstream 434899 4880418 ~ 4881008 (-)
G276761 NA non-coding downstream 439115 4817108 ~ 4876792 (-)
G277065 NA non-coding upstream 29186 5355900 ~ 5358204 (-)
G277066 NA non-coding upstream 31737 5358451 ~ 5359228 (-)
G277443 NA non-coding upstream 120437 5447151 ~ 5448687 (-)
G277447 NA non-coding upstream 233220 5559934 ~ 5560322 (-)
G277494 dcn non-coding upstream 331770 5658484 ~ 5727420 (-)
tmpoa LOC108279628 other downstream 331592 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 576908 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 728811 4358625 ~ 4587096 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 654424 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 655578 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2095274 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 2640105 7966819 ~ 7970571 (-)
G278634 NA other upstream 2726374 8053088 ~ 8068077 (-)

Expression


Co-expression Network