LOC117599633


Basic Information

Item Value
gene id LOC117599633
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1496062 ~ 1496168 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580038.1
gtgctgtgacTCCACTGGGCAGCACATATAGTAAAATTGGAACGACACAGAGAAGATTAGCCTGGCCGTGCGAGGATGACACGCAAAATAAGCTTTCTCCACTGAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580038.1 True 107 ncRNA 0.49 1 1496062 1496168

Neighbor

gene id symbol gene type direction distance location
LOC117599489 NA coding downstream 84447 1411131 ~ 1411615 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding downstream 100118 1391900 ~ 1395944 (-)
LOC117599496 NA coding downstream 107384 1388196 ~ 1388678 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding downstream 119743 1366111 ~ 1376319 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 240876 1242138 ~ 1255186 (-)
LOC117599435 NA coding upstream 875456 2371624 ~ 2373304 (-)
LOC117599527 NA coding upstream 883721 2379889 ~ 2381334 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding upstream 916374 2412542 ~ 2415193 (-)
LOC117599531 NA coding upstream 932340 2428508 ~ 2428941 (-)
LOC117599505 NA coding upstream 958084 2454252 ~ 2455081 (-)
G275369 LOC108261400,LOC108279477,LOC108261423,LOC108262466,LOC108261705,LOC108261384,LOC108261555,LOC108261687,LOC108261611 non-coding downstream 34006 1396439 ~ 1462056 (-)
G275416 LOC108279477,LOC108261384,LOC108261705,LOC108261687,LOC108261555,LOC108262265,LOC108261423,LOC108444129,LOC108412318 non-coding downstream 37863 1441239 ~ 1458199 (-)
G275412 NA non-coding downstream 41856 1413392 ~ 1454206 (-)
LOC117599503 NA non-coding downstream 44350 1449082 ~ 1451712 (-)
G275408 NA non-coding downstream 62179 1386552 ~ 1433883 (-)
LOC117599485 NA non-coding upstream 93145 1589313 ~ 1589798 (-)
LOC117599525 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 non-coding upstream 96986 1593154 ~ 1593964 (-)
LOC117599524 NA non-coding upstream 132855 1629023 ~ 1629581 (-)
LOC117599523 LOC108261687,LOC108279477,LOC108261423,LOC108261555,LOC108261705,LOC108261384,LOC108262466 non-coding upstream 135571 1631739 ~ 1632322 (-)
LOC117599504 NA non-coding upstream 191040 1687208 ~ 1687679 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other downstream 54917 1415905 ~ 1441145 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 198163 1263749 ~ 1297899 (-)
LOC117599495 NA other downstream 213128 1282454 ~ 1282934 (-)
LOC117599510 NA other downstream 864675 629064 ~ 631387 (-)
LOC117599533 NA other downstream 895033 597414 ~ 601029 (-)
LOC117599486 LOC108279477 other upstream 91602 1587770 ~ 1627263 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 542067 2038235 ~ 2040062 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other upstream 565319 2061487 ~ 2062120 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other upstream 569506 2065674 ~ 2069129 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other upstream 592896 2089064 ~ 2111948 (-)

Expression


Co-expression Network