trnae-cuc_38


Basic Information

Item Value
gene id trnae-cuc_38
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18212322 ~ 18212393 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnae-cuc_38
tccctggaggactagtggttaggcctcggcgctcTCATCGCCGCtacctgggttcgattcccagccagggaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnae-cuc_38 True 72 tRNA 0.63 1 18212322 18212393

Neighbor

gene id symbol gene type direction distance location
tnnt2e LOC108425385,LOC108279691,LOC107658902,LOC107725993 coding downstream 55762 18145872 ~ 18156560 (-)
arl1 arl1 coding downstream 70548 18137795 ~ 18141774 (-)
slc5a8 LOC108279688 coding downstream 105876 18097627 ~ 18106446 (-)
strip2 strip2,LOC107656389 coding downstream 188850 17990629 ~ 18023472 (-)
ano2b LOC108279462,LOC108425378 coding downstream 241078 17907628 ~ 17971244 (-)
tnni4a zgc:101560,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC108425328,LOC107658770,LOC107584059 coding upstream 13107 18225500 ~ 18233739 (-)
dock4b dock4b,LOC108279862,LOC108425388,LOC107656358,LOC106609220 coding upstream 272047 18484440 ~ 18593405 (-)
tmem168a LOC108280006,LOC108425390,LOC103042505 coding upstream 452816 18665209 ~ 18675567 (-)
gpr85 gpr85,LOC106576049,LOC107584006,LOC106609248 coding upstream 527382 18739775 ~ 18744162 (-)
ppp1r3aa NA coding upstream 569354 18781747 ~ 18787897 (-)
G284559 NA non-coding downstream 27330 18180379 ~ 18184992 (-)
G284520 NA non-coding downstream 123380 18088654 ~ 18088942 (-)
G284352 NA non-coding downstream 311055 17901025 ~ 17901267 (-)
G284349 NA non-coding downstream 314092 17895335 ~ 17898230 (-)
G284323 NA non-coding downstream 361428 17850457 ~ 17850894 (-)
G284590 NA non-coding upstream 134060 18346453 ~ 18346836 (-)
G284862 NA non-coding upstream 607549 18819942 ~ 18823200 (-)
G284866 NA non-coding upstream 618532 18830925 ~ 18831139 (-)
G284882 NA non-coding upstream 649452 18861845 ~ 18862152 (-)
G284885 mdfic,LOC107095313,LOC106906624,LOC106523521 non-coding upstream 655664 18868057 ~ 18938095 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 618 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 119778 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 121700 18090551 ~ 18090622 (-)
trnaa-ugc_11 NA other downstream 128468 18083783 ~ 18083854 (-)
trnaa-ugc_10 NA other downstream 129013 18083238 ~ 18083309 (-)
LOC113532190 NA other upstream 486528 18698921 ~ 18747833 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 1465890 19678283 ~ 19735232 (-)
G285607 NA other upstream 2100674 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 3248433 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 4273843 22486236 ~ 22489467 (-)

Expression


Co-expression Network