trnal-aag_11


Basic Information

Item Value
gene id trnal-aag_11
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 7593727 ~ 7593808 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnal-aag_11
GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGGgcgtgggttcgaatcccaccgcTGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-aag_11 True 82 tRNA 0.65 1 7593727 7593808

Neighbor

gene id symbol gene type direction distance location
pnpla3 LOC108279447,LOC108428138 coding downstream 1687 7560149 ~ 7592040 (-)
ttll12 ttll12,LOC107581273 coding downstream 33611 7539924 ~ 7560116 (-)
LOC113531701 NA coding downstream 65784 7510088 ~ 7527943 (-)
optn optn coding downstream 190220 7391215 ~ 7403507 (-)
ninj2 ninj2,LOC108279754,LOC108428107,LOC103036097,LOC107581271,LOC107743858,LOC107656339,LOC107725989 coding downstream 303336 7248866 ~ 7290391 (-)
mpped1 mpped1,LOC107726058,LOC107658834,LOC107592234,LOC107656320 coding upstream 49639 7643447 ~ 7690136 (-)
scube1 scube1,LOC107592233,LOC107726032 coding upstream 107224 7701032 ~ 7786479 (-)
c18h12orf45 c19h12orf45 coding upstream 232481 7826289 ~ 7830138 (-)
chst11 chst11,LOC107580584,LOC107656313,LOC107743617,LOC107592229 coding upstream 277936 7871744 ~ 7924698 (-)
LOC113531950 NA coding upstream 339165 7932973 ~ 7936791 (-)
LOC117599592 NA non-coding downstream 59445 7530784 ~ 7534282 (-)
G278312 NA non-coding downstream 97464 7495572 ~ 7496263 (-)
LOC117599447 NA non-coding downstream 177656 7414348 ~ 7416071 (-)
G278275 NA non-coding downstream 364287 7229005 ~ 7229440 (-)
G278265 NA non-coding downstream 519142 7071746 ~ 7074585 (-)
G278520 NA non-coding upstream 203027 7796835 ~ 7879017 (-)
G278911 NA non-coding upstream 623205 8217013 ~ 8217293 (-)
G278920 NA non-coding upstream 645166 8238974 ~ 8239676 (-)
G278963 NA non-coding upstream 795690 8389498 ~ 8390559 (-)
G279064 NA non-coding upstream 1018310 8612118 ~ 8612342 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 93648 7421988 ~ 7500079 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other downstream 1588598 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 1609163 5982292 ~ 5984564 (-)
tmpoa LOC108279628 other downstream 2609412 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 2854728 4734931 ~ 4738999 (-)
avpr1ab LOC108279517 other upstream 373011 7966819 ~ 7970571 (-)
G278634 NA other upstream 459280 8053088 ~ 8068077 (-)
G278912 NA other upstream 624753 8218561 ~ 8219680 (-)
G279415 NA other upstream 1613543 9207351 ~ 9208563 (-)
cracr2ab LOC108280118 other upstream 2284673 9878481 ~ 9892386 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_027596 BX950868.1 non-coding NC_007115.7 CM002888.2 39669246 ~ 39669933 (+)
rainbow trout (Oncorhynchus mykiss) trnal-aag-66 NA coding NC_048585.1 CM023239.2 39158927 ~ 39159008 (-)
eurasian perch (Perca fluviatilis) trnal-aag_11 NA coding NC_053132.1 CM020929.1 12610821 ~ 12610902 (+)
tiger barb (Puntius tetrazona) trnal-aag_73 NA coding NW_025047962.1 JAEQBD010000307.1 72419 ~ 72500 (+)
tiger barb (Puntius tetrazona) trnaa-ugc_57 NA coding NC_056704.1 CM032073.1 13444011 ~ 13444082 (-)
mexican tetra (Astyanax mexicanus) trnal-aag_24 NA coding NW_019172914.1 APWO02000140.1 930526 ~ 930607 (+)