trnam-cau_46


Basic Information

Item Value
gene id trnam-cau_46
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 6103076 ~ 6103147 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnam-cau_46
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTCTGCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnam-cau_46 True 72 tRNA 0.60 1 6103076 6103147

Neighbor

gene id symbol gene type direction distance location
LOC113532437 NA coding downstream 69883 6033029 ~ 6033193 (-)
ucn3l ucn3 coding downstream 91533 6010290 ~ 6011543 (-)
si:dkeyp-38g8.5 LOC108280028 coding downstream 312087 5784910 ~ 5790989 (-)
LOC113532275 LOC108279443 coding downstream 477377 5565677 ~ 5625699 (-)
pah pah coding downstream 552123 5529156 ~ 5550953 (-)
lrguk lrguk coding upstream 30412 6133559 ~ 6163886 (-)
exoc4 exoc4,LOC107555552,LOC107585070,LOC107676929,LOC107690838,LOC107729851 coding upstream 63389 6166536 ~ 6316303 (-)
cax1 LOC108279788,LOC108444418,LOC107725610,LOC107690555,LOC107729854,LOC107584270 coding upstream 705654 6808801 ~ 6827179 (-)
smo smo,LOC107725609,LOC107729864,LOC107690544 coding upstream 725606 6828753 ~ 6842024 (-)
tspan33a tspan33,tspan33a,LOC107725621,LOC107676927 coding upstream 742751 6845898 ~ 6862027 (-)
G277567 NA non-coding downstream 105684 5960674 ~ 5997392 (-)
G277577 NA non-coding downstream 114732 5978950 ~ 5988344 (-)
G277500 NA non-coding downstream 321905 5778002 ~ 5781171 (-)
G277502 NA non-coding downstream 336809 5761660 ~ 5766267 (-)
G277519 NA non-coding downstream 372007 5730845 ~ 5731069 (-)
G277878 NA non-coding upstream 680512 6783659 ~ 6787471 (-)
G277881 NA non-coding upstream 688115 6791262 ~ 6791475 (-)
G278225 NA non-coding upstream 774605 6877752 ~ 6878941 (-)
G278265 NA non-coding upstream 968599 7071746 ~ 7074585 (-)
G278275 NA non-coding upstream 1125858 7229005 ~ 7229440 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other downstream 97947 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 118512 5982292 ~ 5984564 (-)
tmpoa LOC108279628 other downstream 1118761 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 1364077 4734931 ~ 4738999 (-)
LOC117599578 LOC108279645 other downstream 1620511 4466061 ~ 4482565 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 1318841 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 1863672 7966819 ~ 7970571 (-)
G278634 NA other upstream 1949941 8053088 ~ 8068077 (-)
G278912 NA other upstream 2115414 8218561 ~ 8219680 (-)
G279415 NA other upstream 3104204 9207351 ~ 9208563 (-)

Expression


Co-expression Network