XLOC_005287 (pvalb9)


Basic Information

Item Value
gene id XLOC_005287
gene name pvalb9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 17695986 ~ 17698669 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010156
TTTCTATATTACGTAGTGGATACCTGAACCACACAcgcagagagaaaaagagagagagagagagagagagagagagagagagagagagagaaagagagagagagagagagagagagagagagagagagagagagagacagagcgattCTGTCAAAATACCCACTGTTATTAGGGCGAAGTGCAGGCACATGTGCGCGCATTCGGTCCGAGCCTCATTTAAATAGTAAAGGATAATTAGTTGGGCAAGAAATTCAAGTCGATCCGAATTTGATACACTGACAGGTAACCCAAGCATCTCTCATTGTCCGTCCCATtagcatatacatatatatataagtagGTGAGCGGATGAGAGACGCTTATCACACAGCCTTACCTCTGCTCCAGATCAGCGCGAGGAGACTCTTCACAGGTCAGATGCTGCTTTTTGCTTAACATCTAACAACTCTTGTTGAATTTATTAGAGTCgctatgtttatatgtttatgttttatgtttaattcattttaaagctATTTCTGTAAGAGAGGATTGACTAGAAAGTAGAGTAAATTGCATTGTAGCATTGATCAAGAAGATGCCAAAGTAAATGTTACAGCTAATCtattattttgatgtattttacactttttgaatgttacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatgcatacacatcaTGTAAAGGAATGTTTTATTCTCTCAACAGTTTGAATATGTCACTTACTTCCATCCTCTCAGCTGAAGCCATTGAAAATGCTGTCAAAGACTGCCAAGCTCCGGACTCCTTTTGTTACAAAAAGTTCTTCCAGCTTTGTGGCCTGAGCCAGAAAACTCCTCAGGAGGTGAAGGATGTCTTCCGTATCATAGATGAGGATAACAGTGGATTTATCGAGGAGGCTGAGCTCAAGTTCTTTCTCCAGCGGTTTTTCCCGGGGGCACGAACCCTGACAGAAAAGGAGATTAAGAGCCTCCTCACAGCTGCAGATGATGATAGTGATGGCCGAATTGGAGTAGATGAGTTCCAGACTATGGTTTCATCCTGAAAGATTCCTCAAGCCCTCGGCTATATGCACCGCAGCCTCTTCTGTCATTTTGCTTTTTACACCtgatttcttttcaaaataaGAATCAGCACATGAAGTAAACAAATGACTTTTGAATACATGTGTCTGTTCGTTGTTCCACATTCACCTCAAATGACCAATGATAAAACTGTtcagggaaaataaaataaagacactaAACTGTTGCATTTgccttactgtttttttttttttttttttttttttttggatctgcTTTAGCTTTTTACACTGGAAAAAGTGATGAGttgatttagctttttttttaaaaaaggagtaagtttaatt
>TCONS_00010157
AAAATACCCACTGTTATTAGGGCGAAGTGCAGGCACATGTGCGCGCATTCGGTCCGAGCCTCATTTAAATAGTAAAGGATAATTAGTTGGGCAAGAAATTCAAGTCGATCCGAATTTGATACACTGACAGGTAACCCAAGCATCTCTCATTGTCCGTCCCATtagcatatacatatatatataagtagGTGAGCGGATGAGAGACGCTTATCACACAGCCTTACCTCTGCTCCAGATCAGCGCGAGGAGACTCTTCACAGTTTGAATATGTCACTTACTTCCATCCTCTCAGCTGAAGCCATTGAAAATGCTGTCAAAGACTGCCAAGCTCCGGACTCCTTTTGTTACAAAAAGTTCTTCCAGCTTTGTGGCCTGAGCCAGAAAACTCCTCAGGAGGTGAAGGATGTCTTCCGTATCATAGATGAGGATAACAGTGGATTTATCGAGGAGGCTGAGCTCAAGTTCTTTCTCCAGCGGTTTTTCCCGGGGGCACGAACCCTGACAGAAAAGGAGATTAAGAGCCTCCTCACAGCTGCAGATGATGATAGTGATGGCCGAATTGGAGTAGATGAGTTCCAGACTATGGTTTCATCCTGAAAGATTCCTCAAGCCCTCGGCTATATGCACCGCAGCCTCTTCTGTCATTTTGCTTTTTACACCtgatttcttttcaaaataaGAATCAGCACATGAAGTAAACAAATGACTTTTGAATACATGTGTCTGTTCGTTGTTCCACATTCACCTCAAATGACCAATGATAAAACTGTtcagggaaaataaaataaagacactaAACTGTT
>TCONS_00010158
GCTTATCACACAGCCTTACCTCTGCTCCAGATCAGCGCGAGGAGACTCTTCACAGTTTGAATATGTCACTTACTTCCATCCTCTCAGCTGAAGCCATTGAAAATGCTGTCAAAGACTGCCAAGCTCCGGACTCCTTTTGTTACAAAAAGTTCTTCCAGCTTTGTGGCCTGAGCCAGAAAACTCCTCAGGAGGTGAAGGATGTCTTCCGTATCATAGATGAGGATAACAGTGGATTTATCGAGGAGGCTGAGCTCAAGTATGTCATTTCAGCCGGTGCTGAGTTCATCAAAAACGAAGAGATGTGATTTCAGCTTTGCTAATGCTGAAAATATGTAGCCATAGATTATGCTTATGTGATTTCAGGACATCCGAAGCACAGTTTATAAGGATTTAGTTGTTCAGTGTGTGATCAGAGGAGGCACTTCTTAATGCTAAAAACGCCATGCTTATAATAGGCATGCATGAAATCCGGTGCATAAAGAGAATTGTTGTTTTTAAGCTTTTTACAATATATGTCCATGTCTTACCTGATAATTCCAGAGTTCCATTTAAACTAAGTCCTTTCTGAATGTAATCCATGGAGATGCtgtcattatgttttttttatgtgatttatCTGTATTATGTAAGGACGTCAACAGAGCTAGAACACAGGAGATGACATTCACATCACACTTTAGCAGGAATGTGTGAaggggattttttatttttttt

Function

symbol description
pvalb9 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in inner ear; pronephric duct; yolk; and yolk syncytial layer. Orthologous to human OCM (oncomodulin) and OCM2 (oncomodulin 2).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030805-4 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in inner ear; pronephric duct; yolk; and yolk syncytial layer. Orthologous to human OCM (oncomodulin) and OCM2 (oncomodulin 2).

Ensembl:

ensembl_id ENSDARG00000071601

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010156 False 1414 mRNA 0.40 4 17695986 17698669
TCONS_00010157 False 803 mRNA 0.43 5 17696107 17698517
TCONS_00010158 True 714 lncRNA 0.40 3 17697132 17698312

Neighbor

gene id symbol gene type direction distance location
XLOC_005286 ccz1 coding downstream 9582 17657224 ~ 17686404 (-)
XLOC_005285 dlgap5 coding downstream 40303 17633354 ~ 17655683 (-)
XLOC_005284 usp42 coding downstream 93028 17570675 ~ 17602958 (-)
XLOC_005283 minpp1b coding downstream 203101 17482607 ~ 17492885 (-)
XLOC_005282 papss2b coding downstream 216908 17458949 ~ 17479078 (-)
XLOC_005288 pvalb3 coding upstream 6549 17705218 ~ 17707517 (-)
XLOC_005289 dre-mir-2192 coding upstream 8123 17706792 ~ 17706901 (-)
XLOC_005290 pvalb2 coding upstream 11756 17710425 ~ 17712498 (-)
XLOC_005291 NA coding upstream 23132 17721801 ~ 17727540 (-)
XLOC_005292 tecpr1a coding upstream 95615 17794284 ~ 17810543 (-)
XLOC_005275 BX000534.1 non-coding downstream 697544 16997206 ~ 16998442 (-)
XLOC_005273 NA non-coding downstream 729178 16964656 ~ 16966808 (-)
XLOC_005272 NA non-coding downstream 752738 16942204 ~ 16943248 (-)
XLOC_005269 BX000534.2 non-coding downstream 794227 16901645 ~ 16901759 (-)
XLOC_005265 BX322603.1 non-coding downstream 949439 16743052 ~ 16746547 (-)
XLOC_005295 NA non-coding upstream 525865 18224534 ~ 18227730 (-)
XLOC_005298 NA non-coding upstream 754538 18453207 ~ 18454407 (-)
XLOC_005303 AL772266.1 non-coding upstream 1039744 18738413 ~ 18738529 (-)

Expression


Co-expression Network