Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC113540114 |
| gene name | LOC108267227 |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 23515699 ~ 23516359 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| description |
|---|
| T-cell receptor gamma, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC113540114 | True | 544 | V_segment | 0.41 | 2 | 23515699 | 23516359 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113540113 | LOC108267226 | coding | downstream | 10518 | 23466417 ~ 23505181 (-) |
| LOC113540011 | NA | coding | downstream | 51974 | 23446805 ~ 23463725 (-) |
| LOC117597115 | NA | coding | downstream | 72956 | 23430300 ~ 23442743 (-) |
| LOC113540008 | NA | coding | downstream | 96809 | 23409414 ~ 23418890 (-) |
| nol7 | NA | coding | downstream | 132811 | 23376456 ~ 23382888 (-) |
| LOC113540016 | NA | coding | upstream | 21069 | 23537428 ~ 23544732 (-) |
| amph | amph | coding | upstream | 30811 | 23547170 ~ 23583496 (-) |
| fam49ba | LOC108267758,LOC106592588,LOC107713994,LOC107718035,LOC107657432,LOC107556887 | coding | upstream | 242025 | 23758384 ~ 23782113 (-) |
| asap1a | LOC108267580,LOC108437251 | coding | upstream | 267739 | 23784098 ~ 23843304 (-) |
| ubtfl | ubtfl,LOC108267581,LOC107718032 | coding | upstream | 328685 | 23845044 ~ 23858386 (-) |
| LOC113540115 | NA | non-coding | downstream | 61478 | 23453233 ~ 23454221 (-) |
| G69551 | NA | non-coding | downstream | 117736 | 23396664 ~ 23397963 (-) |
| G69503 | NA | non-coding | downstream | 236917 | 23278575 ~ 23278782 (-) |
| LOC117597081 | NA | non-coding | downstream | 242085 | 23272162 ~ 23273614 (-) |
| G69320 | NA | non-coding | downstream | 460316 | 23054514 ~ 23055383 (-) |
| G69649 | NA | non-coding | upstream | 77972 | 23594331 ~ 23594544 (-) |
| G69691 | NA | non-coding | upstream | 134692 | 23651051 ~ 23651866 (-) |
| G69916 | NA | non-coding | upstream | 405747 | 23922106 ~ 23922538 (-) |
| LOC117597086 | NA | non-coding | upstream | 414974 | 23931333 ~ 23932235 (-) |
| G70025 | NA | non-coding | upstream | 621934 | 24138293 ~ 24138492 (-) |
| LOC117597116 | NA | other | downstream | 764 | 23514374 ~ 23514935 (-) |
| LOC113540012 | NA | other | downstream | 1660 | 23513456 ~ 23514039 (-) |
| LOC117597075 | LOC108267226,LOC108267227 | other | downstream | 18678 | 23495957 ~ 23497021 (-) |
| LOC117597074 | NA | other | downstream | 19802 | 23495035 ~ 23495897 (-) |
| G69592 | LOC108267226,LOC108267227 | other | downstream | 21780 | 23493379 ~ 23493919 (-) |
| LOC113540013 | NA | other | upstream | 571 | 23516930 ~ 23517670 (-) |
| LOC117597117 | NA | other | upstream | 14879 | 23531238 ~ 23532016 (-) |
| G70255 | rnf220 | other | upstream | 788015 | 24304374 ~ 24304926 (-) |
| ccdc24 | ccdc24 | other | upstream | 1049382 | 24565741 ~ 24586048 (-) |
| ltb4r2b | NA | other | upstream | 2855562 | 26371921 ~ 26376408 (-) |
