LOC117596925


Basic Information

Item Value
gene id LOC117596925
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32742265 ~ 32743137 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596925
ttcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagatccAATAGAGCCACTTGTTACTTCTAAAGTTGTAGGTGAAGGTGatgatgttactctgtcctgcagctACAAAAAATTCAGTGGTACCGTAAACaacctgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatattttggaaagtggagctctgagtcccaaCCCTCCCCCAAGAATGGCTGCTAAAGTTCCTGGagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctgcagcccacagtgacaggaaatccaactgcactgtacaaaaactacacTTTTATTCTACAGTGTTGAGCCTCATCAGCAGAATGAAGagtctacacacagagagaaggtcggatttgtttaaagtgagaatgtgaaataatgatttaacatttcagttttcttcctttcat
>TU88484
TGTGGTGGGGCCAATGCCCCTATTGTAGCAGCATCACTTTCCTCttgtgatgctgaatgtaaagccaggatgcttcagtaagaatcaacaatctgtcagtaacattggtgacactgtcatgtgatgctgtggggcggagcttcagcaacctttatgatgttaacatatcagagtacagaaagaatattttcattcagctaagaccattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagatccAATAGAGCCACTTGTTACTTCTAAAGTTGTAGGTGAAGGTGatgatgttactctgtcctgcagctACAAAAAATTCAGTGGTACCGTAAACaacctgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatattttggaaagtggagctctgagtcccaaCCCTCCCCCAAGAATGGCTGCTAAAGTTCCTGGagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctgcag

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05168 Herpes simplex virus 1 infection
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596925 False 512 V_segment 0.42 2 32742471 32743137
TU88484 True 551 TUCP 0.44 2 32742265 32742970

Neighbor

gene id symbol gene type direction distance location
LOC117597132 NA coding upstream 214605 32524877 ~ 32527660 (+)
LOC117596939 NA coding upstream 248641 32492958 ~ 32493624 (+)
LOC117596954 NA coding upstream 265502 32476272 ~ 32476763 (+)
LOC117597131 NA coding upstream 337164 32404548 ~ 32405101 (+)
LOC117596953 NA coding upstream 344868 32396906 ~ 32397397 (+)
chd8 chd8,LOC108267737,LOC107738141,LOC107591376,LOC107704282 coding downstream 431337 33174474 ~ 33249659 (+)
gpr25 LOC108267152 coding downstream 514092 33257229 ~ 33259292 (+)
LOC117596969 NA non-coding upstream 2154 32738103 ~ 32740111 (+)
G74655 NA non-coding upstream 34767 32707093 ~ 32707498 (+)
LOC117596955 NA non-coding upstream 181496 32560263 ~ 32560769 (+)
LOC117597133 NA non-coding upstream 188961 32542925 ~ 32553304 (+)
LOC117596964 NA non-coding upstream 208659 32532846 ~ 32533606 (+)
LOC117596944 NA non-coding downstream 137574 32880711 ~ 32881365 (+)
G74672 NA non-coding downstream 153667 32896804 ~ 32924735 (+)
G74676 NA non-coding downstream 172403 32915540 ~ 32915973 (+)
LOC117596970 NA non-coding downstream 183479 32926616 ~ 32927014 (+)
G74686 NA non-coding downstream 280839 33023976 ~ 33024331 (+)
LOC117597137 NA other upstream 5994 32721824 ~ 32736271 (+)
LOC117596949 NA other upstream 21801 32713173 ~ 32720464 (+)
LOC117596943 NA other upstream 26742 32714954 ~ 32715523 (+)
LOC117597136 NA other upstream 27404 32699777 ~ 32714861 (+)
LOC117596958 NA other upstream 48162 32693603 ~ 32694103 (+)
LOC117597138 NA other downstream 2363 32745500 ~ 32747793 (+)
mmp14b mmp14b,LOC108267723,LOC103041213,LOC108438939 other downstream 386906 33130043 ~ 33148431 (+)

Expression


Co-expression Network