Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117596927 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 32776966 ~ 32777798 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117596927 | True | 685 | V_segment | 0.39 | 2 | 32776966 | 32777798 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nmnat2 | nmnat2,LOC107658365,LOC107563562 | coding | downstream | 1049414 | 31710064 ~ 31727552 (-) |
| LOC113540064 | NA | coding | downstream | 1232332 | 31538539 ~ 31544634 (-) |
| psmb5 | psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 | coding | downstream | 1243708 | 31528370 ~ 31533258 (-) |
| LOC113540461 | LOC108267708,LOC107591395 | coding | downstream | 1274588 | 31379473 ~ 31502378 (-) |
| LOC113540063 | LOC108267709 | coding | downstream | 1412695 | 31360647 ~ 31364271 (-) |
| LOC117597140 | NA | coding | upstream | 45760 | 32823558 ~ 32825567 (-) |
| LOC117596924 | NA | coding | upstream | 57241 | 32835039 ~ 32835722 (-) |
| LOC117596934 | NA | coding | upstream | 66303 | 32844101 ~ 32845270 (-) |
| LOC117597141 | NA | coding | upstream | 194987 | 32972785 ~ 32977700 (-) |
| LOC117597142 | NA | coding | upstream | 218558 | 32996356 ~ 32996892 (-) |
| LOC117596968 | NA | non-coding | downstream | 7684 | 32767588 ~ 32769282 (-) |
| G74647 | NA | non-coding | downstream | 117005 | 32659532 ~ 32659961 (-) |
| LOC117597135 | NA | non-coding | downstream | 118044 | 32658361 ~ 32658922 (-) |
| G74646 | NA | non-coding | downstream | 124725 | 32651787 ~ 32652241 (-) |
| LOC117596962 | NA | non-coding | downstream | 128868 | 32647281 ~ 32648098 (-) |
| LOC117596938 | NA | non-coding | upstream | 25756 | 32803554 ~ 32804222 (-) |
| LOC117596923 | NA | non-coding | upstream | 31798 | 32809596 ~ 32810296 (-) |
| LOC117597139 | NA | non-coding | upstream | 32634 | 32810432 ~ 32811735 (-) |
| LOC113540133 | NA | non-coding | upstream | 37631 | 32815429 ~ 32816281 (-) |
| LOC117596967 | NA | non-coding | upstream | 72129 | 32849927 ~ 32851375 (-) |
| LOC117596929 | NA | other | downstream | 111546 | 32661892 ~ 32665420 (-) |
| G74644 | NA | other | downstream | 132432 | 32644024 ~ 32644534 (-) |
| LOC117596950 | NA | other | downstream | 143255 | 32633213 ~ 32633711 (-) |
| LOC117596946 | NA | other | downstream | 573061 | 32203394 ~ 32203905 (-) |
| LOC117597125 | NA | other | downstream | 598842 | 32175807 ~ 32178124 (-) |
| G74703 | NA | other | upstream | 88148 | 32865946 ~ 32868466 (-) |
| LOC117597171 | NA | other | upstream | 168336 | 32946134 ~ 32947158 (-) |
| LOC117597170 | NA | other | upstream | 172036 | 32949834 ~ 32950494 (-) |
| LOC117597177 | NA | other | upstream | 193206 | 32971004 ~ 32971513 (-) |
| LOC117597009 | NA | other | upstream | 257105 | 33034903 ~ 33042101 (-) |
