LOC117596929


Basic Information

Item Value
gene id LOC117596929
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32661892 ~ 32665420 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596929
atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagatccAATAGAGCCACTTGTTACTTCTAAAGTTggagatgaaggtgatgaagttactctgtcctgcagctACAAAGGCTTCAGTGGTAGCATATACAATgtgcagtggtacagacaatatccaaaatctaaacccgAGTTTGTTCTCTATATTACTCCAAGTGGAGATCTGAGTTCCAGCAGACCtccaagaatgtctgctaaagttcctggagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctgcggcccacagtgacaggaaatccaactgcactgtacaaaaactttaacacagttttgttataGTGAAAGCAGTTCCGCTGATGATTTAGAGA
>TU88466
agctaagaccattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttctagatgaaggtgatgatgttactctgtcctgcagatACGAAATCGGTGGTACAAACAACTACttgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatatttctcaacGTGGAGATCTGAGCTCCAACCCTcccccaagaatgtctgctgaagttgatgataataataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctggcgcc
>TU88467
ccattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagatccAATAGAGCCACTTGTTACTTCTAAAGTTggagatgaaggtgatgaagttactctgtcctgcagctACAAAGGCTTCAGTGGTAGCATATACAATgtgcagtggtacagacaatatccaaaatctaaacccgAGTTTGTTCTCTATATTACTCCAAGTGGAGATCTGAGTTCCAGCAGACCtccaagaatgtctgctaaagttcctggagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctgc

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596929 True 428 V_segment 0.43 2 32661892 32662467
TU88466 False 358 TUCP 0.44 2 32664898 32665420
TU88467 False 346 TUCP 0.44 2 32661983 32662476

Neighbor

gene id symbol gene type direction distance location
nmnat2 nmnat2,LOC107658365,LOC107563562 coding downstream 934340 31710064 ~ 31727552 (-)
LOC113540064 NA coding downstream 1117258 31538539 ~ 31544634 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding downstream 1128634 31528370 ~ 31533258 (-)
LOC113540461 LOC108267708,LOC107591395 coding downstream 1159514 31379473 ~ 31502378 (-)
LOC113540063 LOC108267709 coding downstream 1297621 31360647 ~ 31364271 (-)
LOC117597140 NA coding upstream 158138 32823558 ~ 32825567 (-)
LOC117596924 NA coding upstream 169619 32835039 ~ 32835722 (-)
LOC117596934 NA coding upstream 178681 32844101 ~ 32845270 (-)
LOC117597141 NA coding upstream 307365 32972785 ~ 32977700 (-)
LOC117597142 NA coding upstream 330936 32996356 ~ 32996892 (-)
G74647 NA non-coding downstream 1931 32659532 ~ 32659961 (-)
LOC117597135 NA non-coding downstream 2970 32658361 ~ 32658922 (-)
G74646 NA non-coding downstream 9651 32651787 ~ 32652241 (-)
LOC117596962 NA non-coding downstream 13794 32647281 ~ 32648098 (-)
G74640 NA non-coding downstream 33896 32627561 ~ 32627996 (-)
LOC117596968 NA non-coding upstream 102168 32767588 ~ 32769282 (-)
LOC117596927 NA non-coding upstream 111546 32776966 ~ 32777798 (-)
LOC117596938 NA non-coding upstream 138134 32803554 ~ 32804222 (-)
LOC117596923 NA non-coding upstream 144176 32809596 ~ 32810296 (-)
LOC117597139 NA non-coding upstream 145012 32810432 ~ 32811735 (-)
G74644 NA other downstream 17358 32644024 ~ 32644534 (-)
LOC117596950 NA other downstream 28181 32633213 ~ 32633711 (-)
LOC117596946 NA other downstream 457987 32203394 ~ 32203905 (-)
LOC117597125 NA other downstream 483768 32175807 ~ 32178124 (-)
LOC117596948 NA other downstream 486482 32174918 ~ 32175410 (-)
G74703 NA other upstream 200526 32865946 ~ 32868466 (-)
LOC117597171 NA other upstream 280714 32946134 ~ 32947158 (-)
LOC117597170 NA other upstream 284414 32949834 ~ 32950494 (-)
LOC117597177 NA other upstream 305584 32971004 ~ 32971513 (-)
LOC117597009 NA other upstream 369483 33034903 ~ 33042101 (-)

Expression


Co-expression Network