LOC117596930


Basic Information

Item Value
gene id LOC117596930
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32034799 ~ 32035593 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596930
CTTAGCCCCATTCCAATACAGCTTATGTATGAAGCCCATCTGCcagccaaatgaatgattttaatgtcctcaaattaacacaataatcTGATAGGCTACCTGTGCAGTATGAGAGGAAGCAGAGgtgtgatgaataaatgaataaatatgagtgggtggagctacatgtagagacatcagagacaatctcaaatacacaacactggcatttatttctaaagctaGAGGTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGAGGCTGCAGACAACAGCATTAAACCAGAaaaaccctccagatctgtaaCTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTACAGTCTTCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAAGTCAGTGGACGTGTCACACACGCTGAACCACCTCATACACGATTGTCTATTAAACTTGATAAAATGGGAAAGAAAGtagatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTCTGaggcccacagtgacaggaaacacaactacactgtacaaaaagCACTACACATGACTGGAGCACAGCCATGCTTTTCTCACAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596930 True 676 V_segment 0.42 2 32034799 32035593

Neighbor

gene id symbol gene type direction distance location
smg7 smg7,LOC107658366,LOC107563557,LOC107557277 coding upstream 281132 31732612 ~ 31753667 (+)
lamc2 LOC108267337 coding upstream 328530 31690175 ~ 31706269 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 coding upstream 350332 31619845 ~ 31684467 (+)
dhx9 dhx9 coding upstream 424602 31596514 ~ 31610197 (+)
LOC113540625 LOC108267346 coding upstream 440112 31587261 ~ 31594687 (+)
LOC113540131 NA coding downstream 46326 32081919 ~ 32105291 (+)
LOC117597128 NA coding downstream 281395 32316988 ~ 32319907 (+)
LOC117596959 NA coding downstream 300495 32336088 ~ 32336582 (+)
LOC117596952 NA coding downstream 302718 32338311 ~ 32338811 (+)
LOC117596931 NA coding downstream 304902 32340495 ~ 32341411 (+)
LOC117597174 NA non-coding upstream 88257 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 171642 31859960 ~ 31863157 (+)
LOC113540254 NA non-coding upstream 186933 31778121 ~ 31847866 (+)
G74384 NA non-coding upstream 291704 31734656 ~ 31743095 (+)
G74370 NA non-coding upstream 327363 31707228 ~ 31707436 (+)
G74573 NA non-coding downstream 171768 32207361 ~ 32207824 (+)
G74578 NA non-coding downstream 248615 32284208 ~ 32296534 (+)
G74580 NA non-coding downstream 282839 32318432 ~ 32340074 (+)
LOC117596964 NA non-coding downstream 497253 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 507332 32542925 ~ 32553304 (+)
LOC117597124 NA other upstream 59731 31974340 ~ 31975068 (+)
LOC117597123 NA other upstream 62520 31970934 ~ 31972279 (+)
LOC117596936 NA other upstream 66842 31967199 ~ 31967957 (+)
LOC117597122 NA other upstream 69663 31960869 ~ 31965136 (+)
LOC113540067 NA other upstream 258001 31759889 ~ 31776798 (+)
LOC117596932 NA other downstream 177666 32213259 ~ 32214313 (+)
LOC117597126 NA other downstream 212325 32247918 ~ 32261238 (+)
LOC117597127 NA other downstream 233751 32269344 ~ 32272134 (+)
LOC117596951 NA other downstream 238442 32274035 ~ 32274523 (+)
LOC117596933 NA other downstream 244421 32280014 ~ 32280776 (+)

Expression


Co-expression Network