LOC117596933


Basic Information

Item Value
gene id LOC117596933
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32280014 ~ 32280776 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596933
ATGTATGAAGCCCATCTGCcagccaaatgaatgattttaatgtcctcaaattaacacaataatcTGATAGGCTACCTGTGCAGTATGAGAGGAAGCAGAgttgtgatgaataaatgaataaatatgagtgggtggagctacatgtagagacatcagagacaatctcaaatacacaacactggcatttatttctaaagctaGAGGTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGAGGCTGCAGACAACAGCATTAAACCAGAACAAACCTCCAGATCTGTAACTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTACAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTCCTGCTGATTAATGAAGCCAGTGGACTTGTCACACATGCTGAACCACCTCATCCACAATTGTCTATTAAACTTGATAAAATGGGAAAgaaagtggatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTCTGacgcccacagtgacaggaaacacaactacactgtacaaaaagCACTACACATGACTGGAGCACAGCCATGCTTTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596933 True 645 V_segment 0.42 2 32280014 32280776

Neighbor

gene id symbol gene type direction distance location
LOC113540131 NA coding upstream 174723 32081919 ~ 32105291 (+)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277 coding upstream 526347 31732612 ~ 31753667 (+)
lamc2 LOC108267337 coding upstream 573745 31690175 ~ 31706269 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 coding upstream 595547 31619845 ~ 31684467 (+)
dhx9 dhx9 coding upstream 669817 31596514 ~ 31610197 (+)
LOC117597128 NA coding downstream 36212 32316988 ~ 32319907 (+)
LOC117596959 NA coding downstream 55312 32336088 ~ 32336582 (+)
LOC117596952 NA coding downstream 57535 32338311 ~ 32338811 (+)
LOC117596931 NA coding downstream 59719 32340495 ~ 32341411 (+)
LOC117596942 NA coding downstream 75220 32355996 ~ 32356585 (+)
G74573 NA non-coding upstream 72190 32207361 ~ 32207824 (+)
LOC117597174 NA non-coding upstream 333472 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 416857 31859960 ~ 31863157 (+)
LOC113540254 NA non-coding upstream 432148 31778121 ~ 31847866 (+)
G74384 NA non-coding upstream 536919 31734656 ~ 31743095 (+)
G74578 NA non-coding downstream 3432 32284208 ~ 32296534 (+)
G74580 NA non-coding downstream 37656 32318432 ~ 32340074 (+)
LOC117596964 NA non-coding downstream 252070 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 262149 32542925 ~ 32553304 (+)
LOC117596955 NA non-coding downstream 279487 32560263 ~ 32560769 (+)
LOC117596951 NA other upstream 5491 32274035 ~ 32274523 (+)
LOC117597127 NA other upstream 7880 32269344 ~ 32272134 (+)
LOC117597126 NA other upstream 18776 32247918 ~ 32261238 (+)
LOC117596932 NA other upstream 65701 32213259 ~ 32214313 (+)
LOC117596940 NA other upstream 236861 31987395 ~ 32043153 (+)
LOC117596937 NA other downstream 13465 32294241 ~ 32295566 (+)
LOC117596941 NA other downstream 305295 32586071 ~ 32586666 (+)
LOC117597134 NA other downstream 314060 32594836 ~ 32596942 (+)
G74651 NA other downstream 407541 32688317 ~ 32688797 (+)
LOC117596965 NA other downstream 408650 32689426 ~ 32690032 (+)

Expression


Co-expression Network