LOC117596935


Basic Information

Item Value
gene id LOC117596935
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32369859 ~ 32370818 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596935
TTAAAGAGACCAGACaccagatttattgtttttatgcccatatattaagaaatgtaaacagaaacataATATGCTTTGGGGTGAGTAACAgcacaataataaactaaaacattACTATAATGTCTCCATCTGAGCTTTTGTGAGGTGTACTTATGGTATCTACTTCTTAGCCCCATTCCAATACAGCTTATGTATGAAGCCCATCTGCcagccaaatgaatgattttaatgtcctcaaattaacacaataatcTGATAGGCTACCTGTGCAGTATGAGAGGAAGCAGAgttgtgatgaataaatgaataaatatgagtgggtggagctacatgtagagacatcagagacaatctcaaatacacaacactggcatttatttctaaagctaGAGGTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCAcacAGGCTGCAGACAACAGCATTAAACCAGAACAAACCTCCAGATCTGTAACTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTACAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAAGGCAGTGGACGTGTCACACAAGCTGAACCACCTCATACACGATTGTCTATTAAACTTGATAAAATGGGAAAgaaagtggatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTCTGaggcccacagtgacaggaaacacaactacactgtacaaaaagCACTACACATGACTGGAGCACAGCCATGCTTTTCTCACAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596935 True 844 V_segment 0.40 2 32369859 32370818

Neighbor

gene id symbol gene type direction distance location
LOC117597130 NA coding upstream 719 32367879 ~ 32369140 (+)
LOC117597129 NA coding upstream 5111 32362641 ~ 32364748 (+)
LOC117596942 NA coding upstream 13274 32355996 ~ 32356585 (+)
LOC117596931 NA coding upstream 28448 32340495 ~ 32341411 (+)
LOC117596952 NA coding upstream 31048 32338311 ~ 32338811 (+)
LOC117596960 NA coding downstream 8605 32379423 ~ 32379917 (+)
LOC117596953 NA coding downstream 26088 32396906 ~ 32397397 (+)
LOC117597131 NA coding downstream 33730 32404548 ~ 32405101 (+)
LOC117596954 NA coding downstream 105454 32476272 ~ 32476763 (+)
LOC117596939 NA coding downstream 122140 32492958 ~ 32493624 (+)
G74580 NA non-coding upstream 29785 32318432 ~ 32340074 (+)
G74578 NA non-coding upstream 73325 32284208 ~ 32296534 (+)
G74573 NA non-coding upstream 162035 32207361 ~ 32207824 (+)
LOC117597174 NA non-coding upstream 423317 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 506702 31859960 ~ 31863157 (+)
LOC117596964 NA non-coding downstream 162028 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 172107 32542925 ~ 32553304 (+)
LOC117596955 NA non-coding downstream 189445 32560263 ~ 32560769 (+)
G74655 NA non-coding downstream 336275 32707093 ~ 32707498 (+)
LOC117596969 NA non-coding downstream 367285 32738103 ~ 32740111 (+)
LOC117597173 NA other upstream 39014 31959022 ~ 32330845 (+)
LOC117596937 NA other upstream 74293 32294241 ~ 32295566 (+)
G74577 NA other upstream 74494 32280217 ~ 32295365 (+)
LOC117596933 NA other upstream 89083 32280014 ~ 32280776 (+)
LOC117596951 NA other upstream 95336 32274035 ~ 32274523 (+)
LOC117596941 NA other downstream 215253 32586071 ~ 32586666 (+)
LOC117597134 NA other downstream 224018 32594836 ~ 32596942 (+)
G74651 NA other downstream 317499 32688317 ~ 32688797 (+)
LOC117596965 NA other downstream 318608 32689426 ~ 32690032 (+)
LOC117596958 NA other downstream 322785 32693603 ~ 32694103 (+)

Expression


Co-expression Network