LOC117596936


Basic Information

Item Value
gene id LOC117596936
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31967199 ~ 31967957 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596936
CATCTGCcagccaaatgaatgattttaatgtcctcaaattaacacaataatcTGATAGGCTACCTGTGCAGTATGAGAGGAAGCAGAGgtgtgatgaataaatgaataaatatgagtgggtggagctacatgtagagacatcagagacaatctcaaatacacaacactggcatttatttctaaagctaGAGGTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGAGGCTGCAGTCAACAGCATTAAACCAGAaaaaccctccagatctgtaaATGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTACAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAATCCACAGAACGTGTCACTGAAGCTGAACCACCTCATACACGATTGTCATTTAAACTTGATAAAATGGGAAAgaaagtggatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTCTGaggcccacagtgacaggaaacacaactacactgtacaaaaagCACTACACATGACTGGAGCACAGCCATGCTTTTCTCACAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596936 True 640 V_segment 0.42 2 31967199 31967957

Neighbor

gene id symbol gene type direction distance location
smg7 smg7,LOC107658366,LOC107563557,LOC107557277 coding upstream 213532 31732612 ~ 31753667 (+)
lamc2 LOC108267337 coding upstream 260930 31690175 ~ 31706269 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 coding upstream 282732 31619845 ~ 31684467 (+)
dhx9 dhx9 coding upstream 357002 31596514 ~ 31610197 (+)
LOC113540625 LOC108267346 coding upstream 372512 31587261 ~ 31594687 (+)
LOC113540131 NA coding downstream 113962 32081919 ~ 32105291 (+)
LOC117597128 NA coding downstream 349031 32316988 ~ 32319907 (+)
LOC117596959 NA coding downstream 368131 32336088 ~ 32336582 (+)
LOC117596952 NA coding downstream 370354 32338311 ~ 32338811 (+)
LOC117596931 NA coding downstream 372538 32340495 ~ 32341411 (+)
LOC117597174 NA non-coding upstream 20657 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 104042 31859960 ~ 31863157 (+)
LOC113540254 NA non-coding upstream 119333 31778121 ~ 31847866 (+)
G74384 NA non-coding upstream 224104 31734656 ~ 31743095 (+)
G74370 NA non-coding upstream 259763 31707228 ~ 31707436 (+)
G74573 NA non-coding downstream 239404 32207361 ~ 32207824 (+)
G74578 NA non-coding downstream 316251 32284208 ~ 32296534 (+)
G74580 NA non-coding downstream 350475 32318432 ~ 32340074 (+)
LOC117596964 NA non-coding downstream 564889 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 574968 32542925 ~ 32553304 (+)
LOC117597122 NA other upstream 2063 31960869 ~ 31965136 (+)
LOC113540067 NA other upstream 190401 31759889 ~ 31776798 (+)
c4h22orf39 c7h22orf39 other upstream 614055 31351201 ~ 31353144 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other upstream 869270 31061730 ~ 31097929 (+)
G73944 NA other upstream 1200067 30746131 ~ 30767132 (+)
LOC117597123 NA other downstream 2977 31970934 ~ 31972279 (+)
LOC117597124 NA other downstream 6383 31974340 ~ 31975068 (+)
LOC117596940 NA other downstream 19438 31987395 ~ 32043153 (+)
LOC117596930 NA other downstream 66842 32034799 ~ 32035593 (+)
LOC117596932 NA other downstream 245302 32213259 ~ 32214313 (+)

Expression


Co-expression Network