Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117596937 |
| gene name | NA |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 32294241 ~ 32295566 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0030163 | protein catabolic process | biological_process |
| GO:0044257 | cellular protein catabolic process | biological_process |
| GO:0044265 | cellular macromolecule catabolic process | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117596937 | True | 1211 | V_segment | 0.39 | 2 | 32294241 | 32295566 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113540131 | NA | coding | upstream | 188950 | 32081919 ~ 32105291 (+) |
| smg7 | smg7,LOC107658366,LOC107563557,LOC107557277 | coding | upstream | 540574 | 31732612 ~ 31753667 (+) |
| lamc2 | LOC108267337 | coding | upstream | 587972 | 31690175 ~ 31706269 (+) |
| lamc1 | lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 | coding | upstream | 609774 | 31619845 ~ 31684467 (+) |
| dhx9 | dhx9 | coding | upstream | 684044 | 31596514 ~ 31610197 (+) |
| LOC117597128 | NA | coding | downstream | 21422 | 32316988 ~ 32319907 (+) |
| LOC117596959 | NA | coding | downstream | 40522 | 32336088 ~ 32336582 (+) |
| LOC117596952 | NA | coding | downstream | 42745 | 32338311 ~ 32338811 (+) |
| LOC117596931 | NA | coding | downstream | 44929 | 32340495 ~ 32341411 (+) |
| LOC117596942 | NA | coding | downstream | 60430 | 32355996 ~ 32356585 (+) |
| G74573 | NA | non-coding | upstream | 86417 | 32207361 ~ 32207824 (+) |
| LOC117597174 | NA | non-coding | upstream | 347699 | 31946048 ~ 31946542 (+) |
| LOC117597031 | NA | non-coding | upstream | 431084 | 31859960 ~ 31863157 (+) |
| LOC113540254 | NA | non-coding | upstream | 446375 | 31778121 ~ 31847866 (+) |
| G74384 | NA | non-coding | upstream | 551146 | 31734656 ~ 31743095 (+) |
| G74580 | NA | non-coding | downstream | 22866 | 32318432 ~ 32340074 (+) |
| LOC117596964 | NA | non-coding | downstream | 237280 | 32532846 ~ 32533606 (+) |
| LOC117597133 | NA | non-coding | downstream | 247359 | 32542925 ~ 32553304 (+) |
| LOC117596955 | NA | non-coding | downstream | 264697 | 32560263 ~ 32560769 (+) |
| G74655 | NA | non-coding | downstream | 411527 | 32707093 ~ 32707498 (+) |
| LOC117596933 | NA | other | upstream | 13465 | 32280014 ~ 32280776 (+) |
| LOC117596951 | NA | other | upstream | 19718 | 32274035 ~ 32274523 (+) |
| LOC117597127 | NA | other | upstream | 22107 | 32269344 ~ 32272134 (+) |
| LOC117597126 | NA | other | upstream | 33003 | 32247918 ~ 32261238 (+) |
| LOC117596932 | NA | other | upstream | 79928 | 32213259 ~ 32214313 (+) |
| LOC117596941 | NA | other | downstream | 290505 | 32586071 ~ 32586666 (+) |
| LOC117597134 | NA | other | downstream | 299270 | 32594836 ~ 32596942 (+) |
| G74651 | NA | other | downstream | 392751 | 32688317 ~ 32688797 (+) |
| LOC117596965 | NA | other | downstream | 393860 | 32689426 ~ 32690032 (+) |
| LOC117596958 | NA | other | downstream | 398037 | 32693603 ~ 32694103 (+) |
