LOC117596939


Basic Information

Item Value
gene id LOC117596939
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32492958 ~ 32493624 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596939
atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttactctgtcctgcaaataCGAAACTACCAGTACTGCAGCAACCACCTACCTGCAGTGGTACAggcaatatccaaaatctaaacctgagttcctaCTTTACATCACTGCAAGTGGCCGTAAAAGTGACCCTCTTCCATCACGTCTGTTTCCTAAAgttgatgataaaaataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctgcggcccacagtgacaggaaatccaactgcactgtacaaaaactttaacacagttttgttatattgaaagcatgaatgaatgaagacatTCTTTCACAATATGAGCGCAGAGCTTGAAGGGATCTTTGAGAAAAGGTGATACAATCTTAATTCCTAGGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596939 True 502 V_segment 0.42 2 32492958 32493624

Neighbor

gene id symbol gene type direction distance location
LOC117596954 NA coding upstream 16195 32476272 ~ 32476763 (+)
LOC117597131 NA coding upstream 87857 32404548 ~ 32405101 (+)
LOC117596953 NA coding upstream 95561 32396906 ~ 32397397 (+)
LOC117596960 NA coding upstream 113041 32379423 ~ 32379917 (+)
LOC117596935 NA coding upstream 122140 32369859 ~ 32370818 (+)
LOC117597132 NA coding downstream 31253 32524877 ~ 32527660 (+)
chd8 chd8,LOC108267737,LOC107738141,LOC107591376,LOC107704282 coding downstream 680850 33174474 ~ 33249659 (+)
gpr25 LOC108267152 coding downstream 763605 33257229 ~ 33259292 (+)
G74580 NA non-coding upstream 152884 32318432 ~ 32340074 (+)
G74578 NA non-coding upstream 196424 32284208 ~ 32296534 (+)
G74573 NA non-coding upstream 285134 32207361 ~ 32207824 (+)
LOC117597174 NA non-coding upstream 546416 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 629801 31859960 ~ 31863157 (+)
LOC117596964 NA non-coding downstream 39222 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 49301 32542925 ~ 32553304 (+)
LOC117596955 NA non-coding downstream 66639 32560263 ~ 32560769 (+)
G74655 NA non-coding downstream 213469 32707093 ~ 32707498 (+)
LOC117596969 NA non-coding downstream 244479 32738103 ~ 32740111 (+)
LOC117597173 NA other upstream 162113 31959022 ~ 32330845 (+)
LOC117596937 NA other upstream 197392 32294241 ~ 32295566 (+)
G74577 NA other upstream 197593 32280217 ~ 32295365 (+)
LOC117596933 NA other upstream 212182 32280014 ~ 32280776 (+)
LOC117596951 NA other upstream 218435 32274035 ~ 32274523 (+)
LOC117596941 NA other downstream 92447 32586071 ~ 32586666 (+)
LOC117597134 NA other downstream 101212 32594836 ~ 32596942 (+)
G74651 NA other downstream 194693 32688317 ~ 32688797 (+)
LOC117596965 NA other downstream 195802 32689426 ~ 32690032 (+)
LOC117596958 NA other downstream 199979 32693603 ~ 32694103 (+)

Expression


Co-expression Network