LOC117596942


Basic Information

Item Value
gene id LOC117596942
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32355996 ~ 32356585 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596942
TGCAAGAGAGACACTCACAACAATCATGTTactcttctttgttttcataGCTGTTAAAAACATTGCAGGTGCTGTTGACAGCAGCATTACACCAGACCAACCCGTCATATCTTCAAGTGAAGGCAGCAGCaccacactgacctgcacataTGATCAATCAGCTCTCTATCTCTACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTTCTGCTGAGCATTATTATATCTACAGAAACTGTCACTAAAGCTGAACAACTTGACCCAAGACTATCCACCAGActccataaaaatgaaaagaaaatagatcTGGAGATCTTTCCTGCTGCAGTATCAGACTCTTCACTGTACTACTGCGCCATGGAGCCCACAGTAACAGGaaactcaaacacactgtacaaaaagtGAAGCTGGATTTTCTCTCAGGAGGGGGAGCTGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596942 True 442 V_segment 0.43 2 32355996 32356585

Neighbor

gene id symbol gene type direction distance location
LOC117596931 NA coding upstream 14585 32340495 ~ 32341411 (+)
LOC117596952 NA coding upstream 17185 32338311 ~ 32338811 (+)
LOC117596959 NA coding upstream 19414 32336088 ~ 32336582 (+)
LOC117597128 NA coding upstream 36089 32316988 ~ 32319907 (+)
LOC113540131 NA coding upstream 250705 32081919 ~ 32105291 (+)
LOC117597129 NA coding downstream 6056 32362641 ~ 32364748 (+)
LOC117597130 NA coding downstream 11294 32367879 ~ 32369140 (+)
LOC117596935 NA coding downstream 13274 32369859 ~ 32370818 (+)
LOC117596960 NA coding downstream 22838 32379423 ~ 32379917 (+)
LOC117596953 NA coding downstream 40321 32396906 ~ 32397397 (+)
G74580 NA non-coding upstream 15922 32318432 ~ 32340074 (+)
G74578 NA non-coding upstream 59462 32284208 ~ 32296534 (+)
G74573 NA non-coding upstream 148172 32207361 ~ 32207824 (+)
LOC117597174 NA non-coding upstream 409454 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 492839 31859960 ~ 31863157 (+)
LOC117596964 NA non-coding downstream 176261 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 186340 32542925 ~ 32553304 (+)
LOC117596955 NA non-coding downstream 203678 32560263 ~ 32560769 (+)
G74655 NA non-coding downstream 350508 32707093 ~ 32707498 (+)
LOC117596969 NA non-coding downstream 381518 32738103 ~ 32740111 (+)
LOC117597173 NA other upstream 25151 31959022 ~ 32330845 (+)
LOC117596937 NA other upstream 60430 32294241 ~ 32295566 (+)
G74577 NA other upstream 60631 32280217 ~ 32295365 (+)
LOC117596933 NA other upstream 75220 32280014 ~ 32280776 (+)
LOC117596951 NA other upstream 81473 32274035 ~ 32274523 (+)
LOC117596941 NA other downstream 229486 32586071 ~ 32586666 (+)
LOC117597134 NA other downstream 238251 32594836 ~ 32596942 (+)
G74651 NA other downstream 331732 32688317 ~ 32688797 (+)
LOC117596965 NA other downstream 332841 32689426 ~ 32690032 (+)
LOC117596958 NA other downstream 337018 32693603 ~ 32694103 (+)

Expression


Co-expression Network