LOC117596943


Basic Information

Item Value
gene id LOC117596943
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32714954 ~ 32715523 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596943
CAACAATCATGTTactcttctttgttttcataGCTGTTAAAAACATTGGTGCTGTTGACAGCAGCATTACACCAGACCAACCCGTCATATCTTCAAGTGAAGGCAGCAGCaccacactgacctgcacataTGATCAATCAGCTGACTATCTCTACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTGCTGCTGAGGATTTTTATATCTTCAGGTGATGTCACTAAAGCTGAACAACTTGACCCAAGACTATCCATCAGACTCCGTAAAAATGAGAGGAAAGTAGATCTGGAGATCTTTCCTGCTGcagtatcagactctgcactgtactactgcgccatggagcccacagtgacacaaaactcaaacacactgtacaaaaagtGAAGCTGGATTTTCTCTCAGGAGGGGGAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596943 True 418 V_segment 0.44 2 32714954 32715523

Neighbor

gene id symbol gene type direction distance location
LOC117597132 NA coding upstream 187294 32524877 ~ 32527660 (+)
LOC117596939 NA coding upstream 221330 32492958 ~ 32493624 (+)
LOC117596954 NA coding upstream 238191 32476272 ~ 32476763 (+)
LOC117597131 NA coding upstream 309853 32404548 ~ 32405101 (+)
LOC117596953 NA coding upstream 317557 32396906 ~ 32397397 (+)
chd8 chd8,LOC108267737,LOC107738141,LOC107591376,LOC107704282 coding downstream 458951 33174474 ~ 33249659 (+)
gpr25 LOC108267152 coding downstream 541706 33257229 ~ 33259292 (+)
G74655 NA non-coding upstream 7456 32707093 ~ 32707498 (+)
LOC117596955 NA non-coding upstream 154185 32560263 ~ 32560769 (+)
LOC117597133 NA non-coding upstream 161650 32542925 ~ 32553304 (+)
LOC117596964 NA non-coding upstream 181348 32532846 ~ 32533606 (+)
G74580 NA non-coding upstream 374880 32318432 ~ 32340074 (+)
LOC117596969 NA non-coding downstream 22580 32738103 ~ 32740111 (+)
LOC117596944 NA non-coding downstream 165188 32880711 ~ 32881365 (+)
G74672 NA non-coding downstream 181281 32896804 ~ 32924735 (+)
G74676 NA non-coding downstream 200017 32915540 ~ 32915973 (+)
LOC117596970 NA non-coding downstream 211093 32926616 ~ 32927014 (+)
LOC117597136 NA other upstream 93 32699777 ~ 32714861 (+)
LOC117596958 NA other upstream 20851 32693603 ~ 32694103 (+)
LOC117596965 NA other upstream 24922 32689426 ~ 32690032 (+)
G74651 NA other upstream 26157 32688317 ~ 32688797 (+)
LOC117597134 NA other upstream 118012 32594836 ~ 32596942 (+)
LOC117597137 NA other downstream 6301 32721824 ~ 32736271 (+)
LOC117596925 NA other downstream 26742 32742265 ~ 32743137 (+)
LOC117597138 NA other downstream 29977 32745500 ~ 32747793 (+)
mmp14b mmp14b,LOC108267723,LOC103041213,LOC108438939 other downstream 414520 33130043 ~ 33148431 (+)

Expression


Co-expression Network