LOC117596944


Basic Information

Item Value
gene id LOC117596944
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32880711 ~ 32881365 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596944
atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattccatacagccactttcccctcatgtagttgtagatgaaggtgatgatgttactctgtcctgcaactACAGTGCTGCTGTACAGAAtctgcagtggtacagacaatatccaaaatctaaaccggagttccttctttatatttttgaaagtgGAGATATGAGTCCAGATCTCcccccaagaatgtctgctaaagttcctggagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctgcagcccacagtgacaggaaatccaactgcactgtacaaaaactacacTTTTATTCTACAGTGTTGAGCCTCATCAGCAGAATGAAGagtctacacacagagagaaggtcggatttgtttaaagtgagaatgtgaaataatgatttaacatttcagttttcttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596944 True 490 V_segment 0.42 2 32880711 32881365

Neighbor

gene id symbol gene type direction distance location
LOC117597132 NA coding upstream 353051 32524877 ~ 32527660 (+)
LOC117596939 NA coding upstream 387087 32492958 ~ 32493624 (+)
LOC117596954 NA coding upstream 403948 32476272 ~ 32476763 (+)
LOC117597131 NA coding upstream 475610 32404548 ~ 32405101 (+)
LOC117596953 NA coding upstream 483314 32396906 ~ 32397397 (+)
chd8 chd8,LOC108267737,LOC107738141,LOC107591376,LOC107704282 coding downstream 293109 33174474 ~ 33249659 (+)
gpr25 LOC108267152 coding downstream 375864 33257229 ~ 33259292 (+)
LOC117596969 NA non-coding upstream 140600 32738103 ~ 32740111 (+)
G74655 NA non-coding upstream 173213 32707093 ~ 32707498 (+)
LOC117596955 NA non-coding upstream 319942 32560263 ~ 32560769 (+)
LOC117597133 NA non-coding upstream 327407 32542925 ~ 32553304 (+)
LOC117596964 NA non-coding upstream 347105 32532846 ~ 32533606 (+)
G74672 NA non-coding downstream 15439 32896804 ~ 32924735 (+)
G74676 NA non-coding downstream 34175 32915540 ~ 32915973 (+)
LOC117596970 NA non-coding downstream 45251 32926616 ~ 32927014 (+)
G74686 NA non-coding downstream 142611 33023976 ~ 33024331 (+)
G74747 NA non-coding downstream 244303 33125668 ~ 33125884 (+)
LOC117597138 NA other upstream 132918 32745500 ~ 32747793 (+)
LOC117596925 NA other upstream 137574 32742265 ~ 32743137 (+)
LOC117597137 NA other upstream 144440 32721824 ~ 32736271 (+)
LOC117596949 NA other upstream 160247 32713173 ~ 32720464 (+)
LOC117596943 NA other upstream 165188 32714954 ~ 32715523 (+)
mmp14b mmp14b,LOC108267723,LOC103041213,LOC108438939 other downstream 248678 33130043 ~ 33148431 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016604 tradv24.0.3 coding NC_007113.7 CM002886.2 36293820 ~ 36294338 (-)
eurasian perch (Perca fluviatilis) LOC120568495 NA misc NC_053122.1 CM020919.1 1721459 ~ 1722291 (+)
tiger barb (Puntius tetrazona) G158482 NA non-coding NC_056721.1 CM032090.1 16725112 ~ 16725449 (+)
tiger barb (Puntius tetrazona) trnaa-agc_3 NA coding NC_056702.1 CM032071.1 26009045 ~ 26009117 (+)