LOC117596946


Basic Information

Item Value
gene id LOC117596946
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32203394 ~ 32203905 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596946
atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgatgatgttactctgtcctgcagatACACAACCAGTTATAGCACAAACAACTACCTGcactggtacagacaatatccaaaatctaaacccgagttccttctttatatttctcaacgtggagctctgagtcccaaCAGAcccccaagaatgtctgctgaagttgatgataataataaacgagtggatctgctcatctcctctgctgctatatcagactctgcactatacaactgtgctctg
>TU88440
attcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgatgatgttactctgtcctgcagatACACAACCAGTTATAGCACAAACAACTACCTGcactggtacagacaatatccaaaatctaaacccgagttccttctttatatttctcaacgtggagctctgagtcccaaCAGAcccccaagaatgtctgctgaagttgatgataataataaacgagtggatctgctcatctcctctgctgctatatcagactctgcactatacaactgtgctctgc

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596946 False 339 V_segment 0.43 2 32203395 32203898
TU88440 True 347 TUCP 0.43 2 32203394 32203905

Neighbor

gene id symbol gene type direction distance location
nmnat2 nmnat2,LOC107658365,LOC107563562 coding downstream 475842 31710064 ~ 31727552 (-)
LOC113540064 NA coding downstream 658760 31538539 ~ 31544634 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding downstream 670136 31528370 ~ 31533258 (-)
LOC113540461 LOC108267708,LOC107591395 coding downstream 701016 31379473 ~ 31502378 (-)
LOC113540063 LOC108267709 coding downstream 839123 31360647 ~ 31364271 (-)
LOC117597140 NA coding upstream 619653 32823558 ~ 32825567 (-)
LOC117596924 NA coding upstream 631134 32835039 ~ 32835722 (-)
LOC117596934 NA coding upstream 640196 32844101 ~ 32845270 (-)
LOC117597141 NA coding upstream 768880 32972785 ~ 32977700 (-)
LOC117597142 NA coding upstream 792451 32996356 ~ 32996892 (-)
LOC117596963 NA non-coding downstream 540 32202081 ~ 32202854 (-)
G74622 NA non-coding downstream 2590 32200365 ~ 32200804 (-)
G74619 NA non-coding downstream 38980 32164054 ~ 32164414 (-)
LOC117595679 NA non-coding downstream 76932 32125572 ~ 32126462 (-)
LOC113540655 NA non-coding downstream 90983 32111586 ~ 32112411 (-)
G74640 NA non-coding upstream 423656 32627561 ~ 32627996 (-)
LOC117596962 NA non-coding upstream 443376 32647281 ~ 32648098 (-)
G74646 NA non-coding upstream 447882 32651787 ~ 32652241 (-)
LOC117597135 NA non-coding upstream 454456 32658361 ~ 32658922 (-)
G74647 NA non-coding upstream 455627 32659532 ~ 32659961 (-)
LOC117597125 NA other downstream 25270 32175807 ~ 32178124 (-)
LOC117596948 NA other downstream 27984 32174918 ~ 32175410 (-)
LOC113540132 NA other downstream 34158 32168582 ~ 32169236 (-)
G74615 NA other downstream 53597 32149195 ~ 32149797 (-)
LOC117596956 NA other downstream 58451 32144459 ~ 32144943 (-)
LOC117596950 NA other upstream 429308 32633213 ~ 32633711 (-)
G74644 NA other upstream 440119 32644024 ~ 32644534 (-)
LOC117596929 NA other upstream 457987 32661892 ~ 32665420 (-)
G74703 NA other upstream 662041 32865946 ~ 32868466 (-)
LOC117597171 NA other upstream 742229 32946134 ~ 32947158 (-)

Expression


Co-expression Network