LOC117596949


Basic Information

Item Value
gene id LOC117596949
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32713173 ~ 32720464 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596949
atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttactctgtcctgcagctACAAAAAATTCAGTGCTACCGTAAACaacctgcagtggtacagacaatatccagaatctaaacctgagttccttctgTACATCACTCCAAGTGGATTTCAAAGTGATCCTATTTCACCACGTCTGTCTGCTAAAGTTCCTGGAGATAAAcaagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctg
>TU88479
cattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttactctgtcctgcagctACAAAAAATTCAGTGCTACCGTAAACaacctgcagtggtacagacaatatccagaatctaaacctgagttccttctgTACATCACTCCAAGTGGATTTCAAAGTGATCCTATTTCACCACGTCTGTCTGCTAAAGTTCCTGGAGATAAAcaagtggatctgctcatctcctctgctgctg
>TU88480
cattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttactctgtcctgcagctACAAAAAATTCAGTGCTACCGTAAACaacctgcagtggtacagacaatatccagaatctaaacctgagttccttctgTACATCACTCCAAGTGGATTTCAAAGTGATCCTATTTCACCACGTCTGTCTGCTAAAGTTCCTGGAGATAAAcaagtggatctgctcatctcctctgctgctg

Function

GO: NA

KEGG:

id description
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596949 True 336 V_segment 0.43 2 32719964 32720464
TU88479 False 312 TUCP 0.43 2 32713173 32720432
TU88480 False 312 TUCP 0.43 2 32719956 32720432

Neighbor

gene id symbol gene type direction distance location
LOC117597132 NA coding upstream 185513 32524877 ~ 32527660 (+)
LOC117596939 NA coding upstream 219549 32492958 ~ 32493624 (+)
LOC117596954 NA coding upstream 236410 32476272 ~ 32476763 (+)
LOC117597131 NA coding upstream 308072 32404548 ~ 32405101 (+)
LOC117596953 NA coding upstream 315776 32396906 ~ 32397397 (+)
chd8 chd8,LOC108267737,LOC107738141,LOC107591376,LOC107704282 coding downstream 454010 33174474 ~ 33249659 (+)
gpr25 LOC108267152 coding downstream 536765 33257229 ~ 33259292 (+)
G74655 NA non-coding upstream 5675 32707093 ~ 32707498 (+)
LOC117596955 NA non-coding upstream 152404 32560263 ~ 32560769 (+)
LOC117597133 NA non-coding upstream 159869 32542925 ~ 32553304 (+)
LOC117596964 NA non-coding upstream 179567 32532846 ~ 32533606 (+)
G74580 NA non-coding upstream 373099 32318432 ~ 32340074 (+)
LOC117596969 NA non-coding downstream 17639 32738103 ~ 32740111 (+)
LOC117596944 NA non-coding downstream 160247 32880711 ~ 32881365 (+)
G74672 NA non-coding downstream 176340 32896804 ~ 32924735 (+)
G74676 NA non-coding downstream 195076 32915540 ~ 32915973 (+)
LOC117596970 NA non-coding downstream 206152 32926616 ~ 32927014 (+)
LOC117596958 NA other upstream 19070 32693603 ~ 32694103 (+)
LOC117596965 NA other upstream 23141 32689426 ~ 32690032 (+)
G74651 NA other upstream 24376 32688317 ~ 32688797 (+)
LOC117597134 NA other upstream 116231 32594836 ~ 32596942 (+)
LOC117596941 NA other upstream 126507 32586071 ~ 32586666 (+)
LOC117597137 NA other downstream 1360 32721824 ~ 32736271 (+)
LOC117596925 NA other downstream 21801 32742265 ~ 32743137 (+)
LOC117597138 NA other downstream 25036 32745500 ~ 32747793 (+)
mmp14b mmp14b,LOC108267723,LOC103041213,LOC108438939 other downstream 409579 33130043 ~ 33148431 (+)

Expression


Co-expression Network