Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117596951 |
| gene name | NA |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 32274035 ~ 32274523 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006508 | proteolysis | biological_process |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117596951 | True | 336 | V_segment | 0.43 | 2 | 32274035 | 32274523 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113540131 | NA | coding | upstream | 168744 | 32081919 ~ 32105291 (+) |
| smg7 | smg7,LOC107658366,LOC107563557,LOC107557277 | coding | upstream | 520368 | 31732612 ~ 31753667 (+) |
| lamc2 | LOC108267337 | coding | upstream | 567766 | 31690175 ~ 31706269 (+) |
| lamc1 | lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 | coding | upstream | 589568 | 31619845 ~ 31684467 (+) |
| dhx9 | dhx9 | coding | upstream | 663838 | 31596514 ~ 31610197 (+) |
| LOC117597128 | NA | coding | downstream | 42465 | 32316988 ~ 32319907 (+) |
| LOC117596959 | NA | coding | downstream | 61565 | 32336088 ~ 32336582 (+) |
| LOC117596952 | NA | coding | downstream | 63788 | 32338311 ~ 32338811 (+) |
| LOC117596931 | NA | coding | downstream | 65972 | 32340495 ~ 32341411 (+) |
| LOC117596942 | NA | coding | downstream | 81473 | 32355996 ~ 32356585 (+) |
| G74573 | NA | non-coding | upstream | 66211 | 32207361 ~ 32207824 (+) |
| LOC117597174 | NA | non-coding | upstream | 327493 | 31946048 ~ 31946542 (+) |
| LOC117597031 | NA | non-coding | upstream | 410878 | 31859960 ~ 31863157 (+) |
| LOC113540254 | NA | non-coding | upstream | 426169 | 31778121 ~ 31847866 (+) |
| G74384 | NA | non-coding | upstream | 530940 | 31734656 ~ 31743095 (+) |
| G74578 | NA | non-coding | downstream | 9685 | 32284208 ~ 32296534 (+) |
| G74580 | NA | non-coding | downstream | 43909 | 32318432 ~ 32340074 (+) |
| LOC117596964 | NA | non-coding | downstream | 258323 | 32532846 ~ 32533606 (+) |
| LOC117597133 | NA | non-coding | downstream | 268402 | 32542925 ~ 32553304 (+) |
| LOC117596955 | NA | non-coding | downstream | 285740 | 32560263 ~ 32560769 (+) |
| LOC117597127 | NA | other | upstream | 1901 | 32269344 ~ 32272134 (+) |
| LOC117597126 | NA | other | upstream | 12797 | 32247918 ~ 32261238 (+) |
| LOC117596932 | NA | other | upstream | 59722 | 32213259 ~ 32214313 (+) |
| LOC117596940 | NA | other | upstream | 230882 | 31987395 ~ 32043153 (+) |
| LOC117596930 | NA | other | upstream | 238442 | 32034799 ~ 32035593 (+) |
| LOC117596933 | NA | other | downstream | 5491 | 32280014 ~ 32280776 (+) |
| G74577 | NA | other | downstream | 5694 | 32280217 ~ 32295365 (+) |
| LOC117596937 | NA | other | downstream | 19718 | 32294241 ~ 32295566 (+) |
| LOC117596941 | NA | other | downstream | 311548 | 32586071 ~ 32586666 (+) |
| LOC117597134 | NA | other | downstream | 320313 | 32594836 ~ 32596942 (+) |
