LOC117596952


Basic Information

Item Value
gene id LOC117596952
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32338311 ~ 32338811 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596952
atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttactctgtcctgcaaataCGAAATCAAAAGTGCTACAGGAAACaacctgcagtggtacagacaatatctaAAATCTAAACCCGAGTTTGTTCTCTATATTACTCCAAGTGGAACTCTGAGTCCCAACCCTcccccaagaatgtctgctaaagttcctggagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctg

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596952 True 336 V_segment 0.43 2 32338311 32338811

Neighbor

gene id symbol gene type direction distance location
LOC117596959 NA coding upstream 1729 32336088 ~ 32336582 (+)
LOC117597128 NA coding upstream 18404 32316988 ~ 32319907 (+)
LOC113540131 NA coding upstream 233020 32081919 ~ 32105291 (+)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277 coding upstream 584644 31732612 ~ 31753667 (+)
lamc2 LOC108267337 coding upstream 632042 31690175 ~ 31706269 (+)
LOC117596931 NA coding downstream 1684 32340495 ~ 32341411 (+)
LOC117596942 NA coding downstream 17185 32355996 ~ 32356585 (+)
LOC117597129 NA coding downstream 23830 32362641 ~ 32364748 (+)
LOC117597130 NA coding downstream 29068 32367879 ~ 32369140 (+)
LOC117596935 NA coding downstream 31048 32369859 ~ 32370818 (+)
G74578 NA non-coding upstream 41777 32284208 ~ 32296534 (+)
G74573 NA non-coding upstream 130487 32207361 ~ 32207824 (+)
LOC117597174 NA non-coding upstream 391769 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 475154 31859960 ~ 31863157 (+)
LOC113540254 NA non-coding upstream 490445 31778121 ~ 31847866 (+)
LOC117596964 NA non-coding downstream 194035 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 204114 32542925 ~ 32553304 (+)
LOC117596955 NA non-coding downstream 221452 32560263 ~ 32560769 (+)
G74655 NA non-coding downstream 368282 32707093 ~ 32707498 (+)
LOC117596969 NA non-coding downstream 399292 32738103 ~ 32740111 (+)
LOC117597173 NA other upstream 7466 31959022 ~ 32330845 (+)
LOC117596937 NA other upstream 42745 32294241 ~ 32295566 (+)
G74577 NA other upstream 42946 32280217 ~ 32295365 (+)
LOC117596933 NA other upstream 57535 32280014 ~ 32280776 (+)
LOC117596951 NA other upstream 63788 32274035 ~ 32274523 (+)
LOC117596941 NA other downstream 247260 32586071 ~ 32586666 (+)
LOC117597134 NA other downstream 256025 32594836 ~ 32596942 (+)
G74651 NA other downstream 349506 32688317 ~ 32688797 (+)
LOC117596965 NA other downstream 350615 32689426 ~ 32690032 (+)
LOC117596958 NA other downstream 354792 32693603 ~ 32694103 (+)

Expression


Co-expression Network