LOC117596953


Basic Information

Item Value
gene id LOC117596953
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32396906 ~ 32397397 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596953
atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagatccAATAGAGCCACTTGTTACTCCTAAAGGtgtagatgaaggtgatgaagttactctgtcctgcagttACAAAGGCTTCAGTGCTACCGTAAACAAtctgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatattttggaaagtGGAGGTCTGAGTTCCAACCTTcccccaagaatgtctgctaaagttcctggagataaccgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596953 True 336 V_segment 0.44 2 32396906 32397397

Neighbor

gene id symbol gene type direction distance location
LOC117596960 NA coding upstream 16989 32379423 ~ 32379917 (+)
LOC117596935 NA coding upstream 26088 32369859 ~ 32370818 (+)
LOC117597130 NA coding upstream 27766 32367879 ~ 32369140 (+)
LOC117597129 NA coding upstream 32158 32362641 ~ 32364748 (+)
LOC117596942 NA coding upstream 40321 32355996 ~ 32356585 (+)
LOC117597131 NA coding downstream 7151 32404548 ~ 32405101 (+)
LOC117596954 NA coding downstream 78875 32476272 ~ 32476763 (+)
LOC117596939 NA coding downstream 95561 32492958 ~ 32493624 (+)
LOC117597132 NA coding downstream 127480 32524877 ~ 32527660 (+)
chd8 chd8,LOC108267737,LOC107738141,LOC107591376,LOC107704282 coding downstream 777077 33174474 ~ 33249659 (+)
G74580 NA non-coding upstream 56832 32318432 ~ 32340074 (+)
G74578 NA non-coding upstream 100372 32284208 ~ 32296534 (+)
G74573 NA non-coding upstream 189082 32207361 ~ 32207824 (+)
LOC117597174 NA non-coding upstream 450364 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 533749 31859960 ~ 31863157 (+)
LOC117596964 NA non-coding downstream 135449 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 145528 32542925 ~ 32553304 (+)
LOC117596955 NA non-coding downstream 162866 32560263 ~ 32560769 (+)
G74655 NA non-coding downstream 309696 32707093 ~ 32707498 (+)
LOC117596969 NA non-coding downstream 340706 32738103 ~ 32740111 (+)
LOC117597173 NA other upstream 66061 31959022 ~ 32330845 (+)
LOC117596937 NA other upstream 101340 32294241 ~ 32295566 (+)
G74577 NA other upstream 101541 32280217 ~ 32295365 (+)
LOC117596933 NA other upstream 116130 32280014 ~ 32280776 (+)
LOC117596951 NA other upstream 122383 32274035 ~ 32274523 (+)
LOC117596941 NA other downstream 188674 32586071 ~ 32586666 (+)
LOC117597134 NA other downstream 197439 32594836 ~ 32596942 (+)
G74651 NA other downstream 290920 32688317 ~ 32688797 (+)
LOC117596965 NA other downstream 292029 32689426 ~ 32690032 (+)
LOC117596958 NA other downstream 296206 32693603 ~ 32694103 (+)

Expression


Co-expression Network