LOC117596955


Basic Information

Item Value
gene id LOC117596955
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32560263 ~ 32560769 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596955
atgttcactgttatattcatgtgcctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttactctgtcctgcaaataCGAAACAAGTGATGCATACCCCTACCTGcactggtacagacaatatccaaaatctaaaccggAGTTCCTCCTTTATATTTCTCAACGtggagctctgagtcccaaCCCTcccccaagaatgtctgctaaagttgataaaaataatgataataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctg

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596955 True 342 V_segment 0.43 2 32560263 32560769

Neighbor

gene id symbol gene type direction distance location
LOC117597132 NA coding upstream 32603 32524877 ~ 32527660 (+)
LOC117596939 NA coding upstream 66639 32492958 ~ 32493624 (+)
LOC117596954 NA coding upstream 83500 32476272 ~ 32476763 (+)
LOC117597131 NA coding upstream 155162 32404548 ~ 32405101 (+)
LOC117596953 NA coding upstream 162866 32396906 ~ 32397397 (+)
chd8 chd8,LOC108267737,LOC107738141,LOC107591376,LOC107704282 coding downstream 613705 33174474 ~ 33249659 (+)
gpr25 LOC108267152 coding downstream 696460 33257229 ~ 33259292 (+)
LOC117597133 NA non-coding upstream 6959 32542925 ~ 32553304 (+)
LOC117596964 NA non-coding upstream 26657 32532846 ~ 32533606 (+)
G74580 NA non-coding upstream 220189 32318432 ~ 32340074 (+)
G74578 NA non-coding upstream 263729 32284208 ~ 32296534 (+)
G74573 NA non-coding upstream 352439 32207361 ~ 32207824 (+)
G74655 NA non-coding downstream 146324 32707093 ~ 32707498 (+)
LOC117596969 NA non-coding downstream 177334 32738103 ~ 32740111 (+)
LOC117596944 NA non-coding downstream 319942 32880711 ~ 32881365 (+)
G74672 NA non-coding downstream 336035 32896804 ~ 32924735 (+)
G74676 NA non-coding downstream 354771 32915540 ~ 32915973 (+)
LOC117597173 NA other upstream 229418 31959022 ~ 32330845 (+)
LOC117596937 NA other upstream 264697 32294241 ~ 32295566 (+)
G74577 NA other upstream 264898 32280217 ~ 32295365 (+)
LOC117596933 NA other upstream 279487 32280014 ~ 32280776 (+)
LOC117596951 NA other upstream 285740 32274035 ~ 32274523 (+)
LOC117596941 NA other downstream 25302 32586071 ~ 32586666 (+)
LOC117597134 NA other downstream 34067 32594836 ~ 32596942 (+)
G74651 NA other downstream 127548 32688317 ~ 32688797 (+)
LOC117596965 NA other downstream 128657 32689426 ~ 32690032 (+)
LOC117596958 NA other downstream 132834 32693603 ~ 32694103 (+)

Expression


Co-expression Network