LOC117596956


Basic Information

Item Value
gene id LOC117596956
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32144459 ~ 32144943 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596956
ttcatgtgtctgtggctttcactaggtgactccgtgcgagattcaatacagccactttcccctcgtgcagttgtagatgaaggtgttaatgttactctgtcctgcaactACACAACAAGTTATACAGGAGACAACTACCTGCAGTGGTACAggcaatatccaaaatctaaacccgagttccttctttatatttctcaacTTGGGGCTCTGAGTCCAAACCCTcccccaagaatgtctgctaaagttcatggagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctgcag

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596956 True 324 V_segment 0.46 2 32144459 32144943

Neighbor

gene id symbol gene type direction distance location
nmnat2 nmnat2,LOC107658365,LOC107563562 coding downstream 416907 31710064 ~ 31727552 (-)
LOC113540064 NA coding downstream 599825 31538539 ~ 31544634 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding downstream 611201 31528370 ~ 31533258 (-)
LOC113540461 LOC108267708,LOC107591395 coding downstream 642081 31379473 ~ 31502378 (-)
LOC113540063 LOC108267709 coding downstream 780188 31360647 ~ 31364271 (-)
LOC117597140 NA coding upstream 678615 32823558 ~ 32825567 (-)
LOC117596924 NA coding upstream 690096 32835039 ~ 32835722 (-)
LOC117596934 NA coding upstream 699158 32844101 ~ 32845270 (-)
LOC117597141 NA coding upstream 827842 32972785 ~ 32977700 (-)
LOC117597142 NA coding upstream 851413 32996356 ~ 32996892 (-)
LOC117595679 NA non-coding downstream 17997 32125572 ~ 32126462 (-)
LOC113540655 NA non-coding downstream 32048 32111586 ~ 32112411 (-)
LOC117597180 NA non-coding downstream 212396 31931305 ~ 31932063 (-)
LOC117597178 NA non-coding downstream 234545 31908648 ~ 31909914 (-)
G74553 NA non-coding downstream 242902 31893851 ~ 31901557 (-)
G74619 NA non-coding upstream 19111 32164054 ~ 32164414 (-)
G74622 NA non-coding upstream 55422 32200365 ~ 32200804 (-)
LOC117596963 NA non-coding upstream 57138 32202081 ~ 32202854 (-)
G74640 NA non-coding upstream 482618 32627561 ~ 32627996 (-)
LOC117596962 NA non-coding upstream 502338 32647281 ~ 32648098 (-)
LOC117596961 NA other downstream 11992 32131951 ~ 32132467 (-)
LOC117596957 NA other downstream 31004 32074383 ~ 32113455 (-)
G74607 NA other downstream 77122 32066812 ~ 32067337 (-)
LOC117597121 NA other downstream 233485 31905626 ~ 31910974 (-)
LOC117597011 NA other downstream 260852 31882943 ~ 31883607 (-)
G74615 NA other upstream 4252 32149195 ~ 32149797 (-)
LOC113540132 NA other upstream 23639 32168582 ~ 32169236 (-)
LOC117596948 NA other upstream 29975 32174918 ~ 32175410 (-)
LOC117597125 NA other upstream 30864 32175807 ~ 32178124 (-)
LOC117596946 NA other upstream 58451 32203394 ~ 32203905 (-)

Expression


Co-expression Network