LOC117596957


Basic Information

Item Value
gene id LOC117596957
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32074383 ~ 32113455 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596957
atgttcactgttatattcatgtgtctgtggcttacactaggtgactccatggcagattcaatacagccacttgtTACTTCtaaagttgtagatgaaggtgatgaagttactctgtcctgcagctACAAAAAATTCAGTGGTACCGTAAACaacctgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatatttttgaaagtggagctctgagtcccaaCCCTcccccaagaatgtctgctaaagttcctggagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctg
>TU88425
cattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccacttgtTACTTCtaaagttgtagatgaaggtgatgaagttactctgtcctgcagctACAAAAAATTCAGTGGTACCGTAAACaacctgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatatttttgaaagtggagctctgagtcccaaCCCTcccccaagaatgtctgctaaagttcctggagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctgcagcc

Function

GO: NA

KEGG:

id description
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05332 Graft-versus-host disease

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596957 False 336 V_segment 0.43 2 32074388 32074888
TU88425 True 349 TUCP 0.43 2 32074383 32113455

Neighbor

gene id symbol gene type direction distance location
nmnat2 nmnat2,LOC107658365,LOC107563562 coding downstream 346831 31710064 ~ 31727552 (-)
LOC113540064 NA coding downstream 529749 31538539 ~ 31544634 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding downstream 541125 31528370 ~ 31533258 (-)
LOC113540461 LOC108267708,LOC107591395 coding downstream 572005 31379473 ~ 31502378 (-)
LOC113540063 LOC108267709 coding downstream 710112 31360647 ~ 31364271 (-)
LOC117597140 NA coding upstream 710103 32823558 ~ 32825567 (-)
LOC117596924 NA coding upstream 721584 32835039 ~ 32835722 (-)
LOC117596934 NA coding upstream 730646 32844101 ~ 32845270 (-)
LOC117597141 NA coding upstream 859330 32972785 ~ 32977700 (-)
LOC117597142 NA coding upstream 882901 32996356 ~ 32996892 (-)
LOC117597180 NA non-coding downstream 142320 31931305 ~ 31932063 (-)
LOC117597178 NA non-coding downstream 164469 31908648 ~ 31909914 (-)
G74553 NA non-coding downstream 172826 31893851 ~ 31901557 (-)
LOC113540068 NA non-coding downstream 204375 31867082 ~ 31870008 (-)
G74457 NA non-coding downstream 318079 31753121 ~ 31756304 (-)
LOC117595679 NA non-coding upstream 12117 32125572 ~ 32126462 (-)
G74619 NA non-coding upstream 50599 32164054 ~ 32164414 (-)
G74622 NA non-coding upstream 86910 32200365 ~ 32200804 (-)
LOC117596963 NA non-coding upstream 88626 32202081 ~ 32202854 (-)
G74640 NA non-coding upstream 514106 32627561 ~ 32627996 (-)
G74607 NA other downstream 7046 32066812 ~ 32067337 (-)
LOC117597121 NA other downstream 163409 31905626 ~ 31910974 (-)
LOC117597011 NA other downstream 190776 31882943 ~ 31883607 (-)
G74550 NA other downstream 193827 31880034 ~ 31880556 (-)
G74547 NA other downstream 199556 31874309 ~ 31874827 (-)
LOC117596961 NA other upstream 18496 32131951 ~ 32132467 (-)
LOC117596956 NA other upstream 31004 32144459 ~ 32144943 (-)
G74615 NA other upstream 35740 32149195 ~ 32149797 (-)
LOC113540132 NA other upstream 55127 32168582 ~ 32169236 (-)
LOC117596948 NA other upstream 61463 32174918 ~ 32175410 (-)

Expression


Co-expression Network