LOC117596959


Basic Information

Item Value
gene id LOC117596959
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32336088 ~ 32336582 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596959
atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgatgatgttactctgtcctgcagctACAGTGGTTCAGTAGACGccctgcagtggtacagacaatatccaaaatctaaacctgagttccttcttttCATCACTCCAAGTGGATTTAAAACTGACCCTCTTCCATCACGTCTGTTTCCTAAAgttgatgataaaaataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596959 True 330 V_segment 0.43 2 32336088 32336582

Neighbor

gene id symbol gene type direction distance location
LOC117597128 NA coding upstream 16181 32316988 ~ 32319907 (+)
LOC113540131 NA coding upstream 230797 32081919 ~ 32105291 (+)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277 coding upstream 582421 31732612 ~ 31753667 (+)
lamc2 LOC108267337 coding upstream 629819 31690175 ~ 31706269 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 coding upstream 651621 31619845 ~ 31684467 (+)
LOC117596952 NA coding downstream 1729 32338311 ~ 32338811 (+)
LOC117596931 NA coding downstream 3913 32340495 ~ 32341411 (+)
LOC117596942 NA coding downstream 19414 32355996 ~ 32356585 (+)
LOC117597129 NA coding downstream 26059 32362641 ~ 32364748 (+)
LOC117597130 NA coding downstream 31297 32367879 ~ 32369140 (+)
G74578 NA non-coding upstream 39554 32284208 ~ 32296534 (+)
G74573 NA non-coding upstream 128264 32207361 ~ 32207824 (+)
LOC117597174 NA non-coding upstream 389546 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 472931 31859960 ~ 31863157 (+)
LOC113540254 NA non-coding upstream 488222 31778121 ~ 31847866 (+)
LOC117596964 NA non-coding downstream 196264 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 206343 32542925 ~ 32553304 (+)
LOC117596955 NA non-coding downstream 223681 32560263 ~ 32560769 (+)
G74655 NA non-coding downstream 370511 32707093 ~ 32707498 (+)
LOC117596969 NA non-coding downstream 401521 32738103 ~ 32740111 (+)
LOC117597173 NA other upstream 5243 31959022 ~ 32330845 (+)
LOC117596937 NA other upstream 40522 32294241 ~ 32295566 (+)
G74577 NA other upstream 40723 32280217 ~ 32295365 (+)
LOC117596933 NA other upstream 55312 32280014 ~ 32280776 (+)
LOC117596951 NA other upstream 61565 32274035 ~ 32274523 (+)
LOC117596941 NA other downstream 249489 32586071 ~ 32586666 (+)
LOC117597134 NA other downstream 258254 32594836 ~ 32596942 (+)
G74651 NA other downstream 351735 32688317 ~ 32688797 (+)
LOC117596965 NA other downstream 352844 32689426 ~ 32690032 (+)
LOC117596958 NA other downstream 357021 32693603 ~ 32694103 (+)

Expression


Co-expression Network