LOC117596960


Basic Information

Item Value
gene id LOC117596960
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32379423 ~ 32379917 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596960
atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgtagttgtagatgaaggtgatgatgttactctgtcctgcaaatacagtgtttcagtaaacaacctgcagtggtacagacaatgtccaaaatctaaacctgagttccttcttttCATCACTCCAAGTGGATTTAAAACTGACCCTCTTCCACCACGTCTGTTTCCTAAAgttgatgataaaaataaacaagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgcgctctg

Function

GO:

id name namespace
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596960 True 330 V_segment 0.42 2 32379423 32379917

Neighbor

gene id symbol gene type direction distance location
LOC117596935 NA coding upstream 8605 32369859 ~ 32370818 (+)
LOC117597130 NA coding upstream 10283 32367879 ~ 32369140 (+)
LOC117597129 NA coding upstream 14675 32362641 ~ 32364748 (+)
LOC117596942 NA coding upstream 22838 32355996 ~ 32356585 (+)
LOC117596931 NA coding upstream 38012 32340495 ~ 32341411 (+)
LOC117596953 NA coding downstream 16989 32396906 ~ 32397397 (+)
LOC117597131 NA coding downstream 24631 32404548 ~ 32405101 (+)
LOC117596954 NA coding downstream 96355 32476272 ~ 32476763 (+)
LOC117596939 NA coding downstream 113041 32492958 ~ 32493624 (+)
LOC117597132 NA coding downstream 144960 32524877 ~ 32527660 (+)
G74580 NA non-coding upstream 39349 32318432 ~ 32340074 (+)
G74578 NA non-coding upstream 82889 32284208 ~ 32296534 (+)
G74573 NA non-coding upstream 171599 32207361 ~ 32207824 (+)
LOC117597174 NA non-coding upstream 432881 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 516266 31859960 ~ 31863157 (+)
LOC117596964 NA non-coding downstream 152929 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 163008 32542925 ~ 32553304 (+)
LOC117596955 NA non-coding downstream 180346 32560263 ~ 32560769 (+)
G74655 NA non-coding downstream 327176 32707093 ~ 32707498 (+)
LOC117596969 NA non-coding downstream 358186 32738103 ~ 32740111 (+)
LOC117597173 NA other upstream 48578 31959022 ~ 32330845 (+)
LOC117596937 NA other upstream 83857 32294241 ~ 32295566 (+)
G74577 NA other upstream 84058 32280217 ~ 32295365 (+)
LOC117596933 NA other upstream 98647 32280014 ~ 32280776 (+)
LOC117596951 NA other upstream 104900 32274035 ~ 32274523 (+)
LOC117596941 NA other downstream 206154 32586071 ~ 32586666 (+)
LOC117597134 NA other downstream 214919 32594836 ~ 32596942 (+)
G74651 NA other downstream 308400 32688317 ~ 32688797 (+)
LOC117596965 NA other downstream 309509 32689426 ~ 32690032 (+)
LOC117596958 NA other downstream 313686 32693603 ~ 32694103 (+)

Expression


Co-expression Network