Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117597007 |
| gene name | NA |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 33033018 ~ 33033661 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | description |
|---|---|
| K06553 | VPREB, CD179a; pre-B lymphocyte gene |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117597007 | True | 496 | V_segment | 0.43 | 2 | 33033018 | 33033661 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117597142 | NA | coding | downstream | 36126 | 32996356 ~ 32996892 (-) |
| LOC117597141 | NA | coding | downstream | 55318 | 32972785 ~ 32977700 (-) |
| LOC117596934 | NA | coding | downstream | 187748 | 32844101 ~ 32845270 (-) |
| LOC117596924 | NA | coding | downstream | 197296 | 32835039 ~ 32835722 (-) |
| LOC117597140 | NA | coding | downstream | 207451 | 32823558 ~ 32825567 (-) |
| c4h14orf119 | LOC108267721 | coding | upstream | 97426 | 33131087 ~ 33135775 (-) |
| cbln12 | LOC108267329,LOC107591379,LOC107704284,LOC107557939,LOC103040079,LOC108438942,LOC107668986,LOC107738140 | coding | upstream | 132281 | 33165942 ~ 33168027 (-) |
| G74720 | NA | non-coding | downstream | 1592 | 33031042 ~ 33031426 (-) |
| G74717 | NA | non-coding | downstream | 7172 | 33025421 ~ 33025846 (-) |
| LOC117596966 | NA | non-coding | downstream | 159995 | 32871746 ~ 32873023 (-) |
| G74702 | NA | non-coding | downstream | 170359 | 32862207 ~ 32862659 (-) |
| LOC117596967 | NA | non-coding | downstream | 181643 | 32849927 ~ 32851375 (-) |
| G74731 | NA | non-coding | upstream | 50737 | 33084398 ~ 33084836 (-) |
| G74736 | NA | non-coding | upstream | 74468 | 33108129 ~ 33108638 (-) |
| G74737 | NA | non-coding | upstream | 81083 | 33114744 ~ 33114997 (-) |
| G74744 | NA | non-coding | upstream | 88931 | 33122592 ~ 33122959 (-) |
| G74748 | NA | non-coding | upstream | 92006 | 33125667 ~ 33125874 (-) |
| LOC117597177 | NA | other | downstream | 61505 | 32971004 ~ 32971513 (-) |
| LOC117597170 | NA | other | downstream | 82524 | 32949834 ~ 32950494 (-) |
| LOC117597171 | NA | other | downstream | 85860 | 32946134 ~ 32947158 (-) |
| G74703 | NA | other | downstream | 164552 | 32865946 ~ 32868466 (-) |
| LOC117596929 | NA | other | downstream | 367598 | 32661892 ~ 32665420 (-) |
| LOC117597009 | NA | other | upstream | 1242 | 33034903 ~ 33042101 (-) |
| LOC117597008 | NA | other | upstream | 3400 | 33037061 ~ 33037706 (-) |
| LOC117597193 | NA | other | upstream | 23837 | 33057498 ~ 33058362 (-) |
| LOC117597189 | NA | other | upstream | 48536 | 33082197 ~ 33083322 (-) |
| LOC117596990 | NA | other | upstream | 56545 | 33090206 ~ 33091128 (-) |
